Input parameters:

  Query = AT5G65720.2 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G65720.2, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKTDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVV 80  
WD40-rpts                                          (___________________________________WD 1____

Query       81 QPMEEIGMICKEHNVPFHTDAAQAIGKIPVDVKKWNVALMSMSAHKIYGPKGVGALYVRRRPRIRLEPLMNGGGQERGLR 160 
WD40-rpts      _______________________________)                                                

Query      161 SGTGATQQIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDSRYVGNLNLSFAYVEGESLLMGLKE 240 
WD40-rpts                                                                                      

Query      241 VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEGIDIKNI 320 
WD40-rpts                                                                                      

Query      321 QWSQH 325 
WD40-rpts           

1 WD40-repeats found in QUERY=AT5G65720.2 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    37-112      2.79  229.80  0.04868       25.0%     19.81

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-112    EGFEVTYLPVKTDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIGMICKEHNVPFHTDAAQAIGKIPVDV

   WD40 Template    TGECLRTLSGHTSGVTS--------------VSFSPDGKRLVSGSE-----------------D-----GTIKVWD