Input parameters:

  Query = AT5G65080.2 (Len=197)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G65080.2, Len=197):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCGSSVALFIVSSTGKLYNSSSGDRVVYVSWKRKNFTIFLSWQ 80  
WD40-rpts      (__________________________________________________WD 1_________________________

Query       81 DLEDKTQDYLSHKELLEIVQRKIEEAKGDNVSIESLISMEEQLKSALSVIRARKTELLMELVKNLQDKEKLLKEKNKVLA 160 
WD40-rpts      ________________________)                                                       

Query      161 SEVGKLKKILETGDERAVMSPENSSGHSPPETLPLLK 197 
WD40-rpts                                           

1 WD40-repeats found in QUERY=AT5G65080.2 (Len=197):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-105      3.13  243.80  0.03179       32.5%     11.05

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-105    MGRRRVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCGSSVALFIVSSTGKLYNSSSGDRVVYVSWKRKNFTIFLSWQDLEDKTQDYLSHKELLEIVQRKIEE

   WD40 Template    TGECLR-------------TL----SG-----------HTSGVTSVSFSPDGKRLVSGSEDG-----------TIKVW--------------------------D