Input parameters:

  Query = AT5G65070.3 (Len=232)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G65070.3, Len=232):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRKVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSFSSGDRGIEDQCTLFTFEINLGPL 80  
WD40-rpts      (_______________________________WD 1_______________________________)            

Query       81 SIFLLNSNETPVDFMAKILSRYELEQADDLKTLDLEEKTLNYLSHKELLETIQCKIEEAKSDNVSIDCLKSLEEQLKTAL 160 
WD40-rpts                                                                                      

Query      161 SVTRARKTELMMELVKTHQEKEKLLREENQSLTNQLIKMGKMKKSVEAEDARAMSPESSSDNKPPETLLLLK 232 
WD40-rpts                                                                              

1 WD40-repeats found in QUERY=AT5G65070.3 (Len=232):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-68       3.02  239.26  0.03651       25.0%     22.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-68     MGRRKVEIKRIENKSSRQVTFCKRRNGLMEKARQLSILCESSVALIIISATGRLYSFSSGDRGIEDQC

   WD40 Template    TGECLR-------------TL----SG-----------HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD