Input parameters:

  Query = AT5G65060.2 (Len=185)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G65060.2, Len=185):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRKVEIKRIENKSSRQVTFSKRRKGLIEKARQLSILCESSIAVVAVSGSGKLYDSASGDNMSKIIDRYEIHHADELKA 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 LDLAEKIRNYLPHKELLEIVQSVDSLISMEEQLETALSVIRAKKTELMMEDMKSLQEREKLLIEENQILASQVGKKTFLV 160 
WD40-rpts      _WD 1___________________________________________________________________________

Query      161 IEGDRGMSRENGSGNKVPETLSLLK 185 
WD40-rpts      _____)                   

1 WD40-repeats found in QUERY=AT5G65060.2 (Len=185):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-166      2.99  238.08  0.03785       27.5%     20.11

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-166    MGRRKVEIKRIENKSSRQVTFSKRRKGLIEKARQLSILCESSIAVVAVSGSGKLYDSASGDNMSKIIDRYEIHHADELKALDLAEKIRNYLPHKELLEIVQSVDSLISMEEQLETALSVIRAKKTELMMEDMKSLQEREKLLIEENQILASQVGKKTFLVIEGDRG

   WD40 Template    TGECLR-------------T----LSG-----------HTSGVTSVSFSPDGKRLVSGSEDG-----------------------------T--------IK-------------------------------------------------------------VWD