Input parameters:

  Query = AT5G64730.1 (Len=299)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G64730.1, Len=299):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSATELPTKEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFCSCGG 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMSVVLTKTEII 160 
WD40-rpts      _______)   (_________________WD 3________________)     (________________WD 4____

Query      161 GGSVDGTVRTFDMRIGREMSDNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDCCLTNSD 240 
WD40-rpts      ___________)(_________________WD 5_________________)   (__________________WD 6__

Query      241 AHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTIRVWKK 299 
WD40-rpts      _______________)   (_________________WD 7________________) 

7 WD40-repeats found in QUERY=AT5G64730.1 (Len=299):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       9.54  508.93  8.6e-06       27.5%     53.22
  WD 2:  Seg  5    50-88       9.43  504.05  1.0e-05       25.0%     58.73
  WD 3:  Seg  9    92-130     10.08  531.02  4.3e-06       32.5%     55.91
  WD 4:  Seg 13   136-172      7.05  405.90  0.00021       25.0%     48.00
  WD 5:  Seg 17   173-212      8.07  448.08  5.7e-05       22.5%     53.01
  WD 6:  Seg 21   216-256      8.68  473.17  2.6e-05       35.0%     56.44
  WD 7:  Seg 25   260-298      9.92  524.33  5.3e-06       37.5%     53.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     PTKEAHILKGHEGA--VLAARFNGDGNYALTCGKDRTIRLWN
   WD 2   50-88     -GILIKTYKSHGRE--VRDVHVTSDNAKFCSCGGDRQVYYWD
   WD 3   92-130    -GRVIRKFRGHDGE--VNAVKFNDSSSVVVSAGFDRSLRVWD
   WD 4  136-172    -VEPVQIIDTFLDT--VMSVVLTKT--EIIGGSVDGTVRTFD
   WD 5  173-212    MRIGREMSDNLGQP--VNCISISNDGNCVLAGCLDSTLRLLD
   WD 6  216-256    -GELLQVYKGHISKSFKTDCCLTNSDAHVIGGSEDGLVFFWD
   WD 7  260-298    -AKVLSKFRAHDLV--VTSVSYHPKEDCMLTSSVDGTIRVWK

   WD40 Template    TGECLRTLSGHTSG--VTSVSFSPDGKRLVSGSEDGTIKVWD