Input parameters:

  Query = AT5G64630.3 (Len=428)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G64630.3, Len=428):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVLSIPFVFLHLVCIRELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW 80  
WD40-rpts      (______________WD 1_____________)         (_________________WD 2________________

Query       81 DVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANKPQTKSKGVEKMNYVCQHVIMKADQQRGDETKTIKT 160 
WD40-rpts      )   (_________________WD 3________________)   (_________________WD 4____________

Query      161 HLFHDETLPSFFRRLSWSPDGSFLLIPAGSFKVSPTSEAVNATYVFSRKDLSRPALQLPGASKPVVVVRFCPVAFKLRGS 240 
WD40-rpts      ____)(_____________WD 5_____________)                  (_______________WD 6_____

Query      241 SSEEGFFKLPYRLVFAIATLNSVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAV 320 
WD40-rpts      _________)                    (_________________WD 7_________________)   (______

Query      321 SISVGKKPVDGEEKKHDLEKGDELMTETTPDESKKQAELEQNEESKQPLPSKITTDGKEKEHIMQKTDDEVMTETRHEEE 400 
WD40-rpts      ______________WD 8___________________)                                          

Query      401 NQPLQSKVNTPVSNKPARKRITPMAIDP 428 
WD40-rpts                                  

8 WD40-repeats found in QUERY=AT5G64630.3 (Len=428):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       7.12  408.82  0.00019       12.5%     43.00
  WD 2:  Seg  4    43-81       9.30  499.03  1.2e-05       35.0%     55.17
  WD 3:  Seg  8    85-123      9.25  496.84  1.3e-05       27.5%     54.19
  WD 4:  Seg 12   127-165      7.35  418.46  0.00014       12.5%     37.23
  WD 5:  Seg 15   166-197      5.26  331.85  0.00210       17.5%     29.86
  WD 6:  Seg 18   216-250      7.27  415.02  0.00016       20.0%     27.84
  WD 7:  Seg 22   271-310      8.24  454.99  4.6e-05       25.0%     58.41
  WD 8:  Seg 26   314-358      5.70  350.14  0.00119       10.0%     41.56

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ------MDV-LS------IPFVFLHLVCIRELLASGADGGELFIWK
   WD 2   43-81     WKVHKSLSF-HR------KDVLDLQWSPDDAYLISGSVDNSCIIWD
   WD 3   85-123    GSVHQILDA-HC------HYVQGVAWDPLAKYVASLSSDRTCRIYA
   WD 4  127-165    QTKSKGVEK-MN------YVCQHVIMKADQQRGDETKTIKTHLFHD
   WD 5  166-197    -------ET-LP------SFFRRLSWSPDGSFLLIPAGSFKVSPTS
   WD 6  216-250    ----LQLPG-AS------KPVVVVRFCPVAFKLRGSSSEEGFFKLP
   WD 7  271-310    VAPIAVLAGLHY------AAITDITWSPNASYLALSSQDGYCTLVE
   WD 8  314-358    KELGEAVSI-SVGKKPVDGEEKKHDLEKGDELMTETTPDESKKQAE

   WD40 Template    GECLRTLSG-HT------SGVTSVSFSPDGKRLVSGSEDGTIKVWD