Input parameters:

  Query = AT5G64630.2 (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G64630.2, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGGTIQISWHDGKPVLTVDFHPISGLLATAGADYDIKLWLINSGQAEKKVPSVSYQSSLTYHGCAVNTIRFSPSGELLA 80  
WD40-rpts       (_________________WD 1_________________)            (_________________WD 2_____

Query       81 SGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGV 160 
WD40-rpts      ___________)         (_________________WD 3________________)   (________________

Query      161 AWDPLAKYVASLSSDRTCRIYANKPQTKSKGVEKMNYVCQHVIMKADQQRGDETKTIKTHLFHDETLPSFFRRLSWSPDG 240 
WD40-rpts      _WD 4________________)   (_______________WD 5_______________)(_______________WD 

Query      241 SFLLIPAGSFKVSPTSEAVNATYVFSRKDLSRPALQLPGASKPVVVVRFCPVAFKLRGSSSEEGFFKLPYRLVFAIATLN 320 
WD40-rpts      6______________)              (_________________WD 7________________)           

Query      321 SVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSISVGKKPVDGEEKKHDLEKG 400 
WD40-rpts               (_________________WD 8_________________)   (____________________WD 9___

Query      401 DELMTETTPDESKKQAELEQNEESKQPLPSKITTDGKEKEHIMQKTDDEVMTETRHEEENQPLQSKVNTPVSNKPARKRI 480 
WD40-rpts      ________________)                                                               

Query      481 TPMAIDP 487 
WD40-rpts             

9 WD40-repeats found in QUERY=AT5G64630.2 (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       8.77  476.98  2.3e-05       25.0%     55.07
  WD 2:  Seg  5    54-92       8.72  474.88  2.5e-05       30.0%     43.77
  WD 3:  Seg  8   102-140      9.14  492.39  1.4e-05       35.0%     54.84
  WD 4:  Seg 12   144-182      9.05  488.57  1.6e-05       27.5%     53.52
  WD 5:  Seg 16   186-221      5.15  327.35  0.00241       17.5%     36.98
  WD 6:  Seg 19   222-256      5.28  332.82  0.00203       17.5%     29.24
  WD 7:  Seg 21   271-309      6.24  372.43  0.00060       20.0%     26.76
  WD 8:  Seg 26   330-369      7.70  432.76  9.1e-05       25.0%     57.59
  WD 9:  Seg 30   373-417      4.82  313.85  0.00366       10.0%     34.60

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     KGGTIQISWH-DG------KPVLTVDFHPISGLLATAGADYDIKLWL
   WD 2   54-92     -VSYQSSLTY-HG------CAVNTIRFSPSGELLASGADGGELFIWK
   WD 3  102-140    -WKVHKSLSF-HR------KDVLDLQWSPDDAYLISGSVDNSCIIWD
   WD 4  144-182    -GSVHQILDA-HC------HYVQGVAWDPLAKYVASLSSDRTCRIYA
   WD 5  186-221    -QTKSKGVEK-MN------YVCQHVIMKADQQ---RGDETKTIKTHL
   WD 6  222-256    FHD-----ET-LP------SFFRRLSWSPDGSFLLIPAGSFKVSPTS
   WD 7  271-309    -SRPALQLPG-AS------KPVVVVRFCPVAFKLRGSSSEEGFFKLP
   WD 8  330-369    -VAPIAVLAGLHY------AAITDITWSPNASYLALSSQDGYCTLVE
   WD 9  373-417    -KELGEAVSI-SVGKKPVDGEEKKHDLEKGDELMTETTPDESKKQAE

   WD40 Template    TGECLRTLSG-HT------SGVTSVSFSPDGKRLVSGSEDGTIKVWD