Input parameters:

  Query = AT5G64630.1 (Len=397)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G64630.1, Len=397):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKGGTIQISWHDGKPVLTVDFHPISGLLATAGADYDIKLWLINSGQAEKKVPSVSYQSSLTYHGCAVNTIRFSPSGELLA 80  
WD40-rpts       (_________________WD 1_________________)            (_________________WD 2_____

Query       81 SGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGV 160 
WD40-rpts      ___________)         (_________________WD 3________________)   (________________

Query      161 AWDPLAKYVASLSSDRTCRIYANKPQTKSKGVEKMNYVCQHVIMKADQQRGDETKTIKTHLFHDETLPSFFRRLSWSPDG 240 
WD40-rpts      _WD 4________________)   (_______________WD 5_______________)(_______________WD 

Query      241 SFLLIPAGSFKVSPTSEAVNATYVFSRKDLSRPALQLPGASKPVVVVRFCPVAFKLRGSSSEEGFFKLPYRLVFAIATLN 320 
WD40-rpts      6______________)              (_________________WD 7________________)           

Query      321 SVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSISGLLLVLSLLNLPEPD 397 
WD40-rpts               (_________________WD 8_________________)                            

8 WD40-repeats found in QUERY=AT5G64630.1 (Len=397):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       8.82  479.09  2.2e-05       25.0%     55.79
  WD 2:  Seg  5    54-92       8.87  480.90  2.1e-05       30.0%     45.69
  WD 3:  Seg  8   102-140      9.21  495.26  1.3e-05       35.0%     55.19
  WD 4:  Seg 12   144-182      9.11  491.14  1.5e-05       27.5%     55.58
  WD 5:  Seg 16   186-221      5.29  333.09  0.00202       17.5%     35.31
  WD 6:  Seg 19   222-256      5.50  341.93  0.00153       17.5%     32.56
  WD 7:  Seg 21   271-309      7.05  406.01  0.00021       20.0%     33.10
  WD 8:  Seg 26   330-369      8.00  445.08  6.2e-05       25.0%     58.52

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     KGGTIQISWH-DGKPVLTVDFHPISGLLATAGADYDIKLWL
   WD 2   54-92     -VSYQSSLTY-HGCAVNTIRFSPSGELLASGADGGELFIWK
   WD 3  102-140    -WKVHKSLSF-HRKDVLDLQWSPDDAYLISGSVDNSCIIWD
   WD 4  144-182    -GSVHQILDA-HCHYVQGVAWDPLAKYVASLSSDRTCRIYA
   WD 5  186-221    -QTKSKGVEK-MNYVCQHVIMKADQ---QRGDETKTIKTHL
   WD 6  222-256    FHD-----ET-LPSFFRRLSWSPDGSFLLIPAGSFKVSPTS
   WD 7  271-309    -SRPALQLPG-ASKPVVVVRFCPVAFKLRGSSSEEGFFKLP
   WD 8  330-369    -VAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVE

   WD40 Template    TGECLRTLSG-HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD