Input parameters:

  Query = AT5G63010.1 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G63010.1, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAADCYLEGNADAVEFCPHESYANLLAASTYTLQEGDCPSRSGSVYLFDVGDVEDVGLNLIQKIDTAGVFDIRWSRGGD 80  
WD40-rpts      (______________________WD 1______________________)      (___________________WD 2

Query       81 GGDVALAQADADGCLIVYKIDETESKGTLREVSGKRISSSMCLCLDWDPSSTSIVVGLSDGSASVVSFTDSNLETVQEWK 160 
WD40-rpts      __________________)(_____________________WD 3_____________________)  (__________

Query      161 GHDFELWTASFDLNNPNLVYTGSDDCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDT 240 
WD40-rpts      _________WD 4__________________)       (_________________WD 5_________________) 

Query      241 RSVSRPLNETSVSLGGGVWRIKHHPSLSGVVLAACMHNGFALAKVSDGKGEVLESYNKHHSLAYGADWYRGKDQKQSVVA 320 
WD40-rpts          (_________________WD 6_________________)     (___________________WD 7_______

Query      321 TCSFYDRLLRVWMPITDFSTRCS 343 
WD40-rpts      ____________)          

7 WD40-repeats found in QUERY=AT5G63010.1 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-50       5.33  334.97  0.00190       15.0%     46.14
  WD 2:  Seg  5    57-99       5.86  356.64  0.00097       22.5%     52.90
  WD 3:  Seg  9   100-147      7.22  412.70  0.00017       20.0%     50.16
  WD 4:  Seg 12   150-192      7.63  429.74  0.00010       25.0%     55.02
  WD 5:  Seg 16   200-239      7.96  443.63  6.5e-05       35.0%     50.64
  WD 6:  Seg 20   245-284      5.84  356.10  0.00099       10.0%     53.83
  WD 7:  Seg 24   290-333      5.20  329.44  0.00226       22.5%     50.73

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-50     MD--AA--------DCYLEGNADAVEFCPHES----YA-N----LLAASTYTLQEGDCPSRSGSVYLFD
   WD 2   57-99     -V--GL--------NLIQKIDTAGVFDIRWSR----GG-DGGDVALAQAD----------ADGCLIVYK
   WD 3  100-147    ID--ETESKGTLREVSGKRISSSMCLCLDWDP----SS-T----SIVVGL----------SDGSASVVS
   WD 4  150-192    DSNLET--------VQEWKGHDFELWTASFDL----NNPN----LVYTGS----------DDCKFSCWD
   WD 5  200-239    -N--RV--------FQNSKVHTMGVCCISSNP---SDP-Y----SIFTGS----------YDETLRVWD
   WD 6  245-284    -R--PL--------NETSVSLGGGVWRIKHHP---SLS-G----VVLAAC----------MHNGFALAK
   WD 7  290-333    -G--EV--------LESYNKHHSLAYGADWYRGKDQKQ-S----VVATCS---------FYDRLLRVWM

   WD40 Template    TG--EC--------LRTLSGHTSGVTSVSFSP----DG-K----RLVSGS----------EDGTIKVWD