Input parameters:

  Query = AT5G61700.1 (Len=888)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G61700.1, Len=888):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVNPSPASFWTQANALLRKNLTYQRKHIWTNVRLILVPLFLCLILLAIQQVLDALMKGVSDMSNCGGNVTLPGGICPIPN 80  
WD40-rpts                                                                                      

Query       81 PPSLPPMLQIPQHELRSVKTDFFSYKDLPDKLCRETGSCPVTILFTGDKLPLGKALSANIFSTSFVVNSSDLLPTLANNV 160 
WD40-rpts                                                                                      

Query      161 LGSTEAAGEDNYEDPGIASDLPIYSIQPSCSANSTWPLSLGQIQTAVKCVQGLCLWRNNSVEVNDELFKGSWRGNPAGMP 240 
WD40-rpts                                                                                      

Query      241 NEIVAAYDLMSTDRKNFNVTIWYNSTYNDEFATGQALKLVRVPRSINLISNAYLKFLKGPGTRILFEFLKEVPKEETKMN 320 
WD40-rpts                                                                                      

Query      321 QDIASLLGPLFFTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGDGLKYFRRNDYSIQFVFYFIYSNLQISLAFLVSSI 400 
WD40-rpts                                                                                      

Query      401 FSKVKTVTVIAYILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYPGFSLYRGLYEFSQYASRGNGMKWQDLSDSGMGE 480 
WD40-rpts                                                                                      

Query      481 VFCIMSVEWFLALIVAYYIDQVFTSGKHPFFFLVNLFKSPSSLPRRPTVQRLDSKRVFIDMDKHDVTQERESVQKLRNEG 560 
WD40-rpts                                                                                      

Query      561 STGHAILCDNLKKVYPGRDGNPPKMAVRGLYLSVSSGECFGMLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDICKDMN 640 
WD40-rpts                                         (____________________________WD 1____________

Query      641 KVYTSMGVCPQHDLLWETLTGREHLLFYGRLKNIKGSDLTQAVEESLKSVSLYDGGVGDKPAGNYSGGMKRRLSVAISLI 720 
WD40-rpts      ________________)                                                               

Query      721 GNPKVVYLDEPSTGLDPASRKNLWNVIKRAKQNTAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNSKELKSRYGGSYVF 800 
WD40-rpts                                                                                      

Query      801 TMTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFTVFAWGLADTTLEDVFIKVART 880 
WD40-rpts                                                                                      

Query      881 AQAFISLS 888 
WD40-rpts              

1 WD40-repeats found in QUERY=AT5G61700.1 (Len=888):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   596-657      3.24  248.29  0.02771       27.5%     19.52

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  596-657    SGECFGMLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDICKDMNKVYTSMGVCPQHDLLWE

   WD40 Template    TGECLRTLSGHTSGV-------TSVSFSPDGKRLVSGSEDGTI---------------KVWD