Input parameters:

  Query = AT5G60940.2 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G60940.2, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFGIVRTSVNHAKGSSKTIPKHESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTF 80  
WD40-rpts                          (_________________WD 1________________)              (______

Query       81 YDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTY 160 
WD40-rpts      ___________WD 2________________)(___________________WD 3___________________)    

Query      161 QCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDS 240 
WD40-rpts          (________________WD 4________________)   (__________________WD 5____________

Query      241 TVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESV 320 
WD40-rpts      _____)   (__________________WD 6__________________)    (_________________WD 7___

Query      321 FVTCGIDRSIRFWKESV 337 
WD40-rpts      _____________)   

7 WD40-repeats found in QUERY=AT5G60940.2 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-59       9.09  490.02  1.5e-05       37.5%     55.40
  WD 2:  Seg  6    74-112      9.19  494.12  1.4e-05       27.5%     52.72
  WD 3:  Seg 10   113-156      8.29  457.22  4.3e-05       25.0%     53.03
  WD 4:  Seg 15   165-202      8.94  483.84  1.9e-05       25.0%     44.30
  WD 5:  Seg 18   206-246      8.66  472.28  2.7e-05       32.5%     57.16
  WD 6:  Seg 22   250-291      5.98  361.83  0.00083       15.0%     51.24
  WD 7:  Seg 25   296-334      7.84  438.33  7.7e-05       20.0%     46.54

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-59     -KHESK----TLSEH--KS-VVRCARFSPDGMF--FATGGADTSIKLFE
   WD 2   74-112    -RPLIR----TFYDH--AE-PINDLDFHPRSTI--LISSAKDNCIKFFD
   WD 3  113-156    FSKTTAKRAFKVFQD--TH-NVRSISFHPSGEF--LLAGTDHPIPHLYD
   WD 4  165-202    PSN--F----PDSGV--SG-AINQVRYSSTGSI--YITASKDGAIRLFD
   WD 5  206-246    -AKCVR----SIGNAHGKS-EVTSAVFTKDQRF--VLSSGKDSTVKLWE
   WD 6  250-291    -GRMVK----EYLGA--KRVKLRSQAIFNDTEEFVISIDEASNEVVTWD
   WD 7  296-334    -DKVAK----WPSNH--NG-APRWIEHSPVESV--FVTCGIDRSIRFWK

   WD40 Template    TGECLR----TLSGH--TS-GVTSVSFSPDGKR--LVSGSEDGTIKVWD