Input parameters:

  Query = AT5G60940.1 (Len=429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G60940.1, Len=429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNSGDLEQALQDGNIFRQLNALIVAHLRHHNLSQVASAVASATMTPLNIEVPPNRLLELVAKGLAAENNGTLRGVSSSV 80  
WD40-rpts                                  (______________WD 1______________)    (_____________

Query       81 LLPSSYGSITTPRTASIDFSVNHAKGSSKTIPKHESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMIS 160 
WD40-rpts      ____WD 2________________)       (_________________WD 3________________)        (

Query      161 GDTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTD 240 
WD40-rpts      ____________________WD 4___________________)(___________________WD 5____________

Query      241 HPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTK 320 
WD40-rpts      _______)         (________________WD 6_______________)   (__________________WD 7

Query      321 DQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVTWDARTADKVAKWPSNHNGA 400 
WD40-rpts      _________________)                                      (______________________W

Query      401 PRWIEHSPVESVFVTCGIDRSIRFWKESV 429 
WD40-rpts      D 8______________________)   

8 WD40-repeats found in QUERY=AT5G60940.1 (Len=429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    29-62       4.01  280.39  0.01032        2.5%      7.98
  WD 2:  Seg  3    67-105      7.63  429.64  0.00010       22.5%     40.44
  WD 3:  Seg  7   113-151      9.48  506.18  9.4e-06       37.5%     50.16
  WD 4:  Seg 12   160-204      9.52  508.05  8.8e-06       30.0%     51.03
  WD 5:  Seg 16   205-248      8.26  455.78  4.5e-05       25.0%     52.57
  WD 6:  Seg 21   258-294      8.61  470.38  2.8e-05       25.0%     41.38
  WD 7:  Seg 24   298-338      8.67  472.66  2.7e-05       32.5%     55.78
  WD 8:  Seg 31   377-426      7.93  442.40  6.8e-05       20.0%     48.74

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-62     -------------------------RHHNL--SQVASAVASATMTPLNIEVPPNRLLELVA
   WD 2   67-105    -AE-----NN----------G----TLRGV--SSSVLLPSSYGSITTPRTASIDFSVNHAK
   WD 3  113-151    -KH-----ES----------K----TLSEH--KSVVRCARFSPDGMFFATGGADTSIKLFE
   WD 4  160-204    SGDTQARPLI----------R----TFYDH--AEPINDLDFHPRSTILISSAKDNCIKFFD
   WD 5  205-248    FSK-----TT----------AKRAFKVFQD--THNVRSISFHPSGEFLLAGTDHPIPHLYD
   WD 6  258-294    --------SN----------F----PDSGV--SGAINQVRYSSTGSIYITASKDGAIRLFD
   WD 7  298-338    -AK-----CV----------R----SIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWE
   WD 8  377-426    NEV-----VTWDARTADKVAK----WPSNH--NGAPRWIEHSPVESVFVTCGIDRSIRFWK

   WD40 Template    TGE-----CL----------R----TLSGH--TSGVTSVSFSPDGKRLVSGSEDGTIKVWD