Input parameters:

  Query = AT5G60600.3 (Len=717)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G60600.3, Len=717):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQPASEGSPLLVPRQKYCESLH 80  
WD40-rpts                                                                                      

Query       81 KTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTVDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYN 160 
WD40-rpts                                                                                      

Query      161 IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240 
WD40-rpts                                                                          (___________

Query      241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGED 320 
WD40-rpts      __________________________________________WD 1__________________________________

Query      321 GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGE 400 
WD40-rpts      __________________)                                                             

Query      401 EVDYRNVLHRDGSVLMSISLDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGVI 480 
WD40-rpts                                                                                      

Query      481 APLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATMILHDVPFTEDKVSRVHAARR 560 
WD40-rpts                                                                                      

Query      561 LFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGLLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTE 640 
WD40-rpts                                                                                      

Query      641 YVSCPSCGRTLFDLQEISAEIREKTSHLPGVSVKTQDFHTCFSRKSFLLFLNVNKLNNGADRNHGMHCEWTRRNGRC 717 
WD40-rpts                                                                                   

1 WD40-repeats found in QUERY=AT5G60600.3 (Len=717):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   229-339      3.64  265.19  0.01649       30.0%     13.31

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  229-339    YGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGD

   WD40 Template    TGECLRTLSGHTSG----------------------------------VTSVSFSP-------------------------DGKRLVSGSEDGT------------IKVWD