Input parameters:

  Query = AT5G58760.1 (Len=557)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G58760.1, Len=557):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSTRSRRKRDPEIVIARDTDSELSSSEEEEEEEDNYPFSESEEEDEAVKNGGKIELEKNKAKGKAPITVKLIKKVCKVC 80  
WD40-rpts                                                                                      

Query       81 KQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVVTDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVIPD 160 
WD40-rpts                                     (____________________WD 1____________________)   

Query      161 QVHCAVIRYHSRRVTCLEFHPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASSDGTI 240 
WD40-rpts      (_________________WD 2_________________)(___________________WD 3________________

Query      241 GYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMIDHRTNNSTGEPILIHKQGSKVCGLDC 320 
WD40-rpts      ___)          (__________________WD 4_________________)      (_________________W

Query      321 NPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIV 400 
WD40-rpts      D 5_________________)        (________________WD 6_______________)              

Query      401 HSNDFNRHLTPFKAEWDPKDTSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDPNITTITPVNKLHPRDDVLA 480 
WD40-rpts       (_____________________WD 7____________________)(___________________WD 8________

Query      481 SGSSRSLFIWRPQDNTEMVEEKKDKKIIICYGDSKKKGKKQKRGSDDEDDEDDIFSSKGKNIKVNKYQAKTTKKTKT 557 
WD40-rpts      __________)    (_________________WD 9________________)                       

9 WD40-repeats found in QUERY=AT5G58760.1 (Len=557):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   112-157      4.65  306.66  0.00458       15.0%     27.19
  WD 2:  Seg  9   161-200      8.00  445.17  6.2e-05       32.5%     52.40
  WD 3:  Seg 13   201-244      7.54  426.26  0.00011       35.0%     53.82
  WD 4:  Seg 18   255-295      6.59  386.95  0.00038        5.0%     40.38
  WD 5:  Seg 21   302-341      6.80  395.39  0.00029       20.0%     52.20
  WD 6:  Seg 25   350-386      7.40  420.29  0.00013       30.0%     40.36
  WD 7:  Seg 29   402-448      3.62  264.17  0.01702       10.0%     29.09
  WD 8:  Seg 32   449-491      5.16  327.97  0.00237       20.0%     45.25
  WD 9:  Seg 36   496-534      7.31  416.67  0.00015       15.0%     35.36

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  112-157    TM---S---CPHRVVTDHGILPTSHRNTKNPI-DFV---FKRQ------------LQPRIPPIKPKYV
   WD 2  161-200    -Q---V---H--------CAVIRYHSRRVTCL-EFHPTKNNIL------------LSGDKKGQIGVWD
   WD 3  201-244    FGKVYE---K--------NVYGNIHSVQVNNM-RFSPTNDDMV------------YSASSDGTIGYTD
   WD 4  255-295    NL--NP---D--------GWQGANSWKMLYGM-DINS-EKGVV------------LAADNFGFLHMID
   WD 5  302-341    -T---G---E--------PILIHKQGSKVCGL-DCNPVQPELL------------LSCGNDHFARIWD
   WD 6  350-386    SL---H---D--------L----AHKRVVNSA-YFSPSSGTKI------------LTTCQDNRIRIWD
   WD 7  402-448    SN---D----------------FNRHLTPFKA-EWDP-KDTSESLIVIGRYISENYNGTALHPIDFID
   WD 8  449-491    AS---NGQLV--------AEVMDPNITTITPVNKLHP-RDDVL------------ASGS-SRSLFIWR
   WD 9  496-534    -T---E---M--------VEEKKDKKIIICYG-DSKK-KGKKQ------------KRGSDDEDDEDDI

   WD40 Template    TG---E---C--------LRTLSGHTSGVTSV-SFSP-DGKRL------------VSGSEDGTIKVWD