Input parameters:

  Query = AT5G56190.2 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G56190.2, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDYNGDDLEDEYMADEYDMDDLEDDMNAAFDGRDIDASDSEVEDFDQLNKAADTSAAQARNGKDIQGIPWDSLTLTRKD 80  
WD40-rpts                                                                                      

Query       81 YRKTRLEQYKNYENIPNSGDESAKKCMNTEKGSSFYEFRRNSRSVRSTILHFQLRNLVWATSKHDVYLLSNYSISHWSSL 160 
WD40-rpts                                     (_________________WD 1________________)   (______

Query      161 TGCRSEILNVKGHVAPSEKHPESLLEGFTETQVSTLAVKERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVD 240 
WD40-rpts      ___________WD 2________________)                                  (_____________

Query      241 IYRNSSGALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDPDGLLVDTSNGQTIGTLKGHLD 320 
WD40-rpts      ___WD 3________________)(__________________WD 4_________________)   (___________

Query      321 YSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYDTKSGYKKEQE 400 
WD40-rpts      ______WD 5________________)    (_________________WD 6________________)   (______

Query      401 IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRTRDYTYLDSLL 447 
WD40-rpts      ___________WD 7________________)               

7 WD40-repeats found in QUERY=AT5G56190.2 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   112-150      7.28  415.19  0.00016       12.5%     50.74
  WD 2:  Seg  6   154-192      4.85  315.19  0.00352       12.5%      8.70
  WD 3:  Seg 12   227-264      7.68  431.89  9.4e-05       15.0%     45.11
  WD 4:  Seg 15   265-305      7.94  442.66  6.7e-05       27.5%     57.01
  WD 5:  Seg 19   309-347     10.19  535.51  3.8e-06       30.0%     52.77
  WD 6:  Seg 23   352-390      9.09  490.31  1.5e-05       22.5%     50.88
  WD 7:  Seg 27   394-432      7.03  405.03  0.00022       25.0%     49.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  112-150    -GS-SFYEFRRNSRSVRSTILHFQLRNLVWATSKHDVYLLS
   WD 2  154-192    -IS-HWSSLTGCRSEILNVKGHVAPSEKHPESLLEGFTETQ
   WD 3  227-264    --R-TTYTENAITNAVDIYRNSSGALHFMASNNDCGVRDFD
   WD 4  265-305    MERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDPDGLLVD
   WD 5  309-347    -GQ-TIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD
   WD 6  352-390    -SE-SVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYD
   WD 7  394-432    -GY-KKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD