Input parameters:

  Query = AT5G56190.1 (Len=441)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G56190.1, Len=441):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADFDEYMADEYDMDDLEDDMNAAFDGRDIDASDSEVEDFDQLNKAADTSAAQARNGKDIQGIPWDSLTLTRKDYRKTRL 80  
WD40-rpts                                                                                      

Query       81 EQYKNYENIPNSGDESAKKCMNTEKGSSFYEFRRNSRSVRSTILHFQLRNLVWATSKHDVYLLSNYSISHWSSLTGCRSE 160 
WD40-rpts                               (_________________WD 1________________)                

Query      161 ILNVKGHVAPSEKHPESLLEGFTETQVSTLAVKERLLVAGGFQGELICKHLDRPGVSFCSRTTYTENAITNAVDIYRNSS 240 
WD40-rpts                 (_________________WD 2________________)         (_________________WD 

Query      241 GALHFMASNNDCGVRDFDMERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDPDGLLVDTSNGQTIGTLKGHLDYSFASA 320 
WD40-rpts      3________________)(__________________WD 4_________________)   (_________________

Query      321 WHPNGVTFATGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYDTKSGYKKEQEIDFFGE 400 
WD40-rpts      WD 5________________)    (_________________WD 6________________)   (____________

Query      401 ISGISFSPDTESLFIGVWDRTYGSLLEYGRTRDYTYLDSLL 441 
WD40-rpts      _____WD 7________________)               

7 WD40-repeats found in QUERY=AT5G56190.1 (Len=441):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   106-144      7.10  407.86  0.00020       12.5%     51.15
  WD 2:  Seg  8   172-210      4.63  306.01  0.00467       12.5%     42.22
  WD 3:  Seg 12   220-258      7.40  420.26  0.00013       15.0%     47.80
  WD 4:  Seg 16   259-299      7.66  431.28  9.6e-05       27.5%     57.58
  WD 5:  Seg 20   303-341     10.16  534.30  3.9e-06       30.0%     54.11
  WD 6:  Seg 24   346-384      9.02  487.18  1.7e-05       22.5%     56.44
  WD 7:  Seg 28   388-426      7.52  425.11  0.00012       25.0%     49.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  106-144    -GS-SFYEFRRNSRSVRSTILHFQLRNLVWATSKHDVYLLS
   WD 2  172-210    -EK-HPESLLEGFTETQVSTLAVKERLLVAGGFQGELICKH
   WD 3  220-258    -SR-TTYTENAITNAVDIYRNSSGALHFMASNNDCGVRDFD
   WD 4  259-299    MERYKLVQLFRYLWPVNHSSLSPDGKLVAVVGDDPDGLLVD
   WD 5  303-341    -GQ-TIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD
   WD 6  346-384    -SE-SVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYD
   WD 7  388-426    -GY-KKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD