Input parameters:

  Query = AT5G56130.1 (Len=315)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G56130.1, Len=315):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSD 80  
WD40-rpts                (________________WD 1________________)       (_________________WD 2___

Query       81 LVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMP 160 
WD40-rpts      ______________)   (________________WD 3________________)(__________________WD 4_

Query      161 GDFFFLTTGLGTVEVLSYPSLKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYNTDEGVFRIFGFESS 315 
WD40-rpts      WD 6________________)   (________________WD 7________________)             

7 WD40-repeats found in QUERY=AT5G56130.1 (Len=315):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-48       9.30  498.92  1.2e-05       35.0%     48.46
  WD 2:  Seg  6    56-95       7.67  431.43  9.5e-05       25.0%     47.16
  WD 3:  Seg  9    99-136      7.97  443.97  6.5e-05       20.0%     55.15
  WD 4:  Seg 13   137-177      6.74  392.97  0.00031       12.5%     50.57
  WD 5:  Seg 17   181-219     10.00  527.91  4.8e-06       32.5%     54.98
  WD 6:  Seg 21   223-261      9.39  502.74  1.0e-05       32.5%     56.80
  WD 7:  Seg 25   265-302      7.28  415.34  0.00016       17.5%     55.11

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-48     LHS--REYQ-GHKKKVHSVAWNSNGT-KLASGSVDQTARIWN
   WD 2   56-95     -KAKDLELK-GHTDSVDQLCWDPKHSDLVATASGDKSVRLWD
   WD 3   99-136    -GKCTQQVE-LSGENI-NITYKPDGT-HVAVGNRDDELTILD
   WD 4  137-177    VRKFKPLHRRKFNYEVNEIAWNMPGD-FFFLTTGLGTVEVLS
   WD 5  181-219    -LKPLDTLT-AHTAGCYCIAIDPKGR-YFAVGSADSLVSLWD
   WD 6  223-261    -MLCLRTFT-KLEWPVRTISFNYSGE-YIASASEDLFIDIAN
   WD 7  265-302    -GRTVHQIP-CRAA-MNSVEWNPKYN-LLAYAGDDKNPKYNT

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD