Input parameters:

  Query = AT5G54910.1 (Len=739)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G54910.1, Len=739):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKIKKTKGMRKQIRLNEVEEINLLKQWIESQKPDSGFNPLSLRPLPKDSKIGKSEDGKNGTVFSRYAGVRKFAQLPISD 80  
WD40-rpts                                                                                      

Query       81 KTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTF 160 
WD40-rpts                                (____________________________________________WD 1_____

Query      161 GVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLD 240 
WD40-rpts      _______________________________________)                                        

Query      241 PIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRIL 320 
WD40-rpts                                                                                      

Query      321 VFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVA 400 
WD40-rpts                                                                                      

Query      401 SYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLR 480 
WD40-rpts                                                                                      

Query      481 SIHKRRDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEYEAPLVVKKDLLGEDLEEEDF 560 
WD40-rpts                                                                                      

Query      561 ALKPRKEGKVVEKSTKEEEVLIPGNRVLKNKKLKINLHRPFGSRVVLDEEGNSLAPLASVAAEAGTEVALDEERMNDYYK 640 
WD40-rpts                                                                                      

Query      641 KVGAEMRKADIEDKKVDKERRREKRMKQKIKRKRGAMEDEEEEEEEDHDGSGSSDDETGRNSKRAKKIVSDNEENGGKIN 720 
WD40-rpts                                                                                      

Query      721 TDSLSVADLEEMALKFITQ 739 
WD40-rpts                         

1 WD40-repeats found in QUERY=AT5G54910.1 (Len=739):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   107-200      3.68  266.63  0.01578       27.5%     40.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  107-200    CGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCA

   WD40 Template    TGECLRTLSGHTS-----------------------GVTSVSFSPD--------------------GKRLVSGSEDG-----------TIKVWD