Input parameters:

  Query = AT5G54730.1 (Len=763)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G54730.1, Len=763):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKNGDGSSPKSPDGVVSRSARSSFRALSNCLKVISSGASTVARSAVSAASSAVESHHDQVLWAGFDNLQKEDGDTRRVL 80  
WD40-rpts                                                                                      

Query       81 LLAFKSGFQVWDVEDTENVHVIVSAHDGQAFFMQMLLNPINSGVLDDRFYKSRPLLAVCGDYSSKKISSDNPGSETVATP 160 
WD40-rpts                                          (_______________________WD 1________________

Query      161 TNVYVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSIVCGSLGVGYGPLAVGPRWIA 240 
WD40-rpts      ______)                                                                         

Query      241 YSGSRIATSSSAIFTSEIVSLSTSSPSVAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPNPYIPGLKGIGVGNEKV 320 
WD40-rpts                    (________________WD 2________________)   (________________WD 3____

Query      321 ADAESIGMVIVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTISTSRAVKTTTFAHLFRLQR 400 
WD40-rpts      ____________)   (_________________WD 4_________________)                       (

Query      401 GFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINPEKEGDAPVPMSAISRIRSGNSSGWIGTVSGAASAAAGMVAGSVPG 480 
WD40-rpts      ______________WD 5_____________)                                                

Query      481 TVTSTFCYCDEKSNNNYYGSVADMCSKTNLLVFAPSGCMTQYALREHQVGVGHETAAMTGFDSESGLETEGKLAVDPIRR 560 
WD40-rpts                                        (_____________________WD 6____________________

Query      561 WSMIQNQSRRETHDPHSDIYGGGTSVDSKSKVFPEVVRKQSVEEAWKVSKKGTTRVVDKRHLYIYEAEQQQTHLPTQLPL 640 
WD40-rpts      _)   (__________________WD 7__________________)                                 

Query      641 WARRKFRFQELVLNRGEEISGGGGREMEIEGIQTRTIEARTRDLVPVWGYLQSPRSQQVINESIQSPSTTTQDDKVATLE 720 
WD40-rpts                                                                                      

Query      721 GHGTETDLGAVHSEEQTQSEPVDKEGIAEEKNHSEDEDEEQVD 763 
WD40-rpts                                                 

7 WD40-repeats found in QUERY=AT5G54730.1 (Len=763):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   117-167      5.59  345.76  0.00136       15.0%      0.72
  WD 2:  Seg 15   255-292      4.35  294.40  0.00669       20.0%     29.40
  WD 3:  Seg 18   296-333      5.10  325.30  0.00257       12.5%     29.95
  WD 4:  Seg 21   337-376      7.03  404.96  0.00022       25.0%     55.49
  WD 5:  Seg 26   400-432      6.03  363.70  0.00078       22.5%     46.64
  WD 6:  Seg 32   515-562      3.39  254.89  0.02264       17.5%     12.04
  WD 7:  Seg 34   566-607      3.82  272.31  0.01324       17.5%      2.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-167    LNPINSGVLDDRFYKS--------RPLLAVCGDYSSKKISSDNPGSE---TVATPTN-VYVYS
   WD 2  255-292    -TSE-----------I--------VSLSTSSPSVAQFARDSS-KQLA---SGIANLG-DKGYR
   WD 3  296-333    -KYC-----------S--------EVLPNPYI-PGLKGIGVGNEKVA---DAESIGM-VIVKD
   WD 4  337-376    -KSV-----------I--------TQFKAHKSPISALCFDQSGLLLV---TASIQGHNINVFR
   WD 5  400-432    RG--------------------------FTNAVIQDICFSKDSNLIV---VGSSRGT-SHLFE
   WD 6  515-562    PSGC-----------MTQYALREHQVGVGHETAAMTGFDSESGLETE---GKLAVDP-IRRWS
   WD 7  566-607    -NQS-----------R--------RETHDPHSDIYGGGTSVDSKSKVFPEVVRKQSV-EEAWK

   WD40 Template    TGEC-----------L--------RTLSGHTSGVTSVSFSPDGKRLV---SGSEDGT-IKVWD