Input parameters:

  Query = AT5G54520.1 (Len=457)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G54520.1, Len=457):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRPYPVPEERQYKPPRRPYPPHGSYSESQTSSSFSIPVPVPVPV 80  
WD40-rpts                                                                                      

Query       81 PGRYVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISDSDVPRHVLSSVRHRPKGSSLQTEMPSRMSISLTGHT 160 
WD40-rpts                                                                           (__________

Query      161 KAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVET 240 
WD40-rpts      _______WD 1_________________)     (_________________WD 2________________)(______

Query      241 QSFKEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRANKFVHEYVRDLGPILDVEFIAGGKQFISSSDVSGRNISENAV 320 
WD40-rpts      ____________WD 3__________________)   (____________________WD 4_________________

Query      321 IVWDISREVPLSNQVYVEAYTCPCIKRHPQDPVFIAQSHGNYTAIFSTNPPFKLNKYKRFEGHWVAGFPIKCNFSPDGET 400 
WD40-rpts      ___)(___________________WD 5__________________)(_____________________WD 6_______

Query      401 LASGSSDGSVYMYDYKSTALIKKLKAYEQPCVNVSYHPVLPNVVAACSWNGQVSVFE 457 
WD40-rpts      _____________)   (_________________WD 7_________________)

7 WD40-repeats found in QUERY=AT5G54520.1 (Len=457):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   150-189      8.56  468.21  3.0e-05       32.5%     54.83
  WD 2:  Seg  7   195-233      8.91  482.81  1.9e-05       27.5%     53.66
  WD 3:  Seg 11   234-275      6.98  402.92  0.00023       30.0%     54.10
  WD 4:  Seg 15   279-324      7.60  428.60  0.00010       22.5%     53.61
  WD 5:  Seg 19   325-367      7.07  406.61  0.00021        5.0%     53.36
  WD 6:  Seg 23   368-414      8.02  445.97  6.1e-05       37.5%     49.21
  WD 7:  Seg 27   418-457      7.35  418.10  0.00014       17.5%     47.58

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  150-189    -S-----R---MSISLT-GHTKA--VTAIDWSTSHVHL-LASAGL-------DGAVYVWN
   WD 2  195-233    -K-----K---KVRAFL-HHNAP--VKDVKWSKQG-LS-LLSCGY-------DCTSRLFD
   WD 3  234-275    VE-----R---GVETQSFKEDEV--VGVVKFHPDNCNV-FLSGGS-------KGSLRLWD
   WD 4  279-324    -N-----K---FVHEYV-RDLGP--ILDVEFIAGG-KQ-FISSSDVSGRNISENAVIVWD
   WD 5  325-367    IS-----REVPLSNQVY-VEAYT--CPCIKRHPQD-PV-FIAQSH-------GNYTAIFS
   WD 6  368-414    TNPPFKLN---KYKRFE-GHWVAGFPIKCNFSPDG-ET-LASGSS-------DGSVYMYD
   WD 7  418-457    -T-----A---LIKKLK-AYEQP--CVNVSYHPVL-PNVVAACSW-------NGQVSVFE

   WD40 Template    TG-----E---CLRTLS-GHTSG--VTSVSFSPDG-KR-LVSGSE-------DGTIKVWD