Input parameters:

  Query = AT5G54200.1 (Len=825)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G54200.1, Len=825):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKMMMMNRRRSNVVRFEAKKEDKVEEEDNNDDCFYESLDRVLSSCSCSTSNSDYDSDPNVSDSIHDPTPFPVPMFTSGF 80  
WD40-rpts                                                                                      

Query       81 ELWKSEPESVSERRIRLLRGLGLSNEPDLPPASQLRSRSRRNSSHFSRSVPSDVLTSNHHGKCVLRSDVSGTDNVDREYT 160 
WD40-rpts                                                                                      

Query      161 GSRMRNDGVDFISKEPMERSLRDIVEKENGRDVVLEEQMCTIRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFE 240 
WD40-rpts                                                                                     (

Query      241 ICVGTSPIVLELMRRQNVEDVCKDSVDLDTNVSGSRVTKHRRRGSWLKSIKNVASSVTGYKERRSTDDRDSPSERGGQRF 320 
WD40-rpts      _______________WD 1______________)        (______________WD 2_____________)     

Query      321 SSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESERKGE 400 
WD40-rpts                                (____________________WD 3___________________)         

Query      401 LLSMDKQEDGSINLFLLANGSPEPVSMSPKRRGRTSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQ 480 
WD40-rpts        (___________________WD 4___________________)           (________________WD 5__

Query      481 HLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTP 560 
WD40-rpts      ______________)  (_________________WD 6_________________)   (________________WD 

Query      561 DGQGALVGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRTRVVDGVDLVHKFKG 640 
WD40-rpts      7________________)              (________________WD 8________________)   (______

Query      641 FRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVTVTNSYENFYCRDVSVAAPWPGKISNNHTNNSPEQ 720 
WD40-rpts      ___________WD 9________________)                                            (___

Query      721 SSFTANNNPPTPVNDPTNNKTVTNGIISSATNRYFFDRVSATWPEEKLLLAAKNRARTSPRVSVDMSNIQVNTKPSASAW 800 
WD40-rpts      ______________WD10________________)            (______________________WD11______

Query      801 SMVIVTGSLRGEIRIFQNFGFPVRL 825 
WD40-rpts      ________________)        

11 WD40-repeats found in QUERY=AT5G54200.1 (Len=825):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   240-274      4.04  281.55  0.00996       12.5%     12.93
  WD 2:  Seg  7   283-315      3.21  247.34  0.02853       10.0%     14.89
  WD 3:  Seg 12   347-391      9.17  493.65  1.4e-05       32.5%     47.14
  WD 4:  Seg 17   403-446      4.59  304.42  0.00491       15.0%     35.04
  WD 5:  Seg 20   458-495      6.70  391.39  0.00033       30.0%     50.58
  WD 6:  Seg 24   498-537      7.43  421.76  0.00013       27.5%     52.47
  WD 7:  Seg 28   541-578      6.54  384.66  0.00041       25.0%     56.91
  WD 8:  Seg 33   593-630      5.97  361.20  0.00084       20.0%     48.45
  WD 9:  Seg 36   634-672      8.21  453.71  4.8e-05       32.5%     57.50
  WD10:  Seg 42   717-755      5.35  335.77  0.00186       10.0%     30.71
  WD11:  Seg 45   768-817      4.87  315.72  0.00346       25.0%     43.64

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  240-274    ---------------EICVGTSPIVLELMR-RQ-N-----------VEDVCKDSVDLDTNVSG
   WD 2  283-315    -----------------RGSWLKSIKNVAS-SV-T-----------GYKERRSTDDRDSPSER
   WD 3  347-391    CKE-----LTALFKSQEIQAHKGSIWSIKF-SL-D-----------GRYLASAGEDCVIQIWK
   WD 4  403-446    SMDKQEDGS-----INLFLLANGSPEPVSM-SP-K-----------RRGRTSFS-RKSVSLDN
   WD 5  458-495    -EK-----P-----VCSFVGHLDDVLDLSW-SK-S-----------Q-HLLSSSMDKTVRLWD
   WD 6  498-537    -SK-----T-----CLKVFSHSDYVTCIQF-NPVD-----------DNYFISGSLDAKVRIWS
   WD 7  541-578    -HQ-----V-----VDWNDLHEM-VTAACY-TP-D-----------GQGALVGSYKGTCCLYN
   WD 8  593-630    KN-------------RKKKTHHKKITGFQFVAG-S-----------SSEVLVTSADSRTRVVD
   WD 9  634-672    -LV-----H-----KFKGFRNTNSQISASL-TS-N-----------GKFLVSASEDSNVYVWN
   WD10  717-755    -SP-----E-----QSSFTANNNPPTPVND-PT-N-----------NKTVTNGIISSATNRYF
   WD11  768-817    -LL-----L-----AAKNRARTSPRVSVDM-SN-IQVNTKPSASAWSMVIVTGSLRGEIRIFQ

   WD40 Template    TGE-----C-----LRTLSGHTSGVTSVSF-SP-D-----------GKRLVSGSEDGTIKVWD