Input parameters:

  Query = AT5G52740.1 (Len=118)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G52740.1, Len=118):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVVVLKLDVHCEKTKQKAMSTVCCLSGVNSVEVKDGKLTVTGEIDAYMIVKKLKKICHTEFISVGPVKEPEKKKPDDPK 80  
WD40-rpts      (_____________________________WD 1_____________________________)                

Query       81 KPETKPPDVIYHYVPPCPPYYHNFNGCYNEDPNACVTS 118 
WD40-rpts                                            

1 WD40-repeats found in QUERY=AT5G52740.1 (Len=118):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-64       3.29  250.50  0.02590       32.5%     47.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-64     MQVVVLKLDVHCEKTKQKAMSTVCCLSGVNSVEVK-DGKLTVTGEIDAYMIVKKLKKICHTEFIS

   WD40 Template    TGECLRTLSGHT--------------SGVTSVSFSPDGKRLVSGSED-----------GTIKVWD