Input parameters:

  Query = AT5G52730.1 (Len=185)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G52730.1, Len=185):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYINTHDSIFGAGNHKTFTFLYIISLHSSYKLFHFLKMQQNTNVVFKLEVDERKKKKAMKIVCGFSGVTSLNVMEEGKLT 80  
WD40-rpts                                          (________________________________WD 1_______

Query       81 VTGEFDNYEMTKKLKKICKHVAIIAAEPIREPEQNRNPVTRREPNREPEQNRSRVTRREPSREPEPNRAPLARRESRPRT 160 
WD40-rpts      ________________________)                                                       

Query      161 HSRPSIPHARPSRVRGENSDGCIIM 185 
WD40-rpts                               

1 WD40-repeats found in QUERY=AT5G52730.1 (Len=185):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    37-105      3.15  244.92  0.03072       27.5%     49.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-105    KMQQNTNVVFKLEVDERKKKKAMKIVCGFSGVTSLNVMEEGKLTVTGEFDNYEMTKKLKKICKHVAIIA

   WD40 Template    TG----ECLRTLSGH-------------TSGVTSVSFSPDGKRLVSGSED------------GTIKVWD