Input parameters:

  Query = AT5G52410.2 (Len=761)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G52410.2, Len=761):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTMATWTPSSLQLRIALNHGIFKAPERAKMTKLSRRLRISCVAQNAEPGRDSGESNGSDRFRGWADSGDDENNSRGGD 80  
WD40-rpts      (____________________________WD 1___________________________)                   

Query       81 WFKGTLLSGVAGMVLFVGLTYAALSSKRNVLRPKVEVMVTTVTKSSIDQISTDENEGNIVTSQDNQESYRAFPFLDVSLD 160 
WD40-rpts                                                                                      

Query      161 SQVLSPDEIDVASKSTSTRKDNEEAEKASVSSAERYTSSTELDGVDTHTSQIPNEKQKARRYTGIPAPSTVPQVDSLKPI 240 
WD40-rpts                                                                                      

Query      241 FPTVVDPVQSQMFAALQALKVIESDALPYDLCTRREFARWVVSASNTLSRNSASKVYPAMYIENVTELAFDDITPEDPDF 320 
WD40-rpts                                                                                      

Query      321 PFIQGLAEAGLISSKLSNNNMPSSESSRVTFSPESPLTRQDLLSWKMALEFRQLPEADSKKLYQLSGFLDIDKINPEAWP 400 
WD40-rpts                                                                                      

Query      401 ALIADLSAGEHGITALSFGRTRLFQPSKAVTKAQTAVSLAIGDAFEVVGEELARIEAEAMAENVVCAHNELVAQVEKDIN 480 
WD40-rpts                                                                                      

Query      481 ASFEKELLREKEIVDAVEKLAEEAKSELARLRVEKEEETLALERERTSIETEMEALARIRNELEEQLQSLASNKAEMSYE 560 
WD40-rpts                                                                                      

Query      561 KERFDRLQKQVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKYGLKVIVDSDLHEQTTKT 640 
WD40-rpts                                                                                      

Query      641 ESTWLNAGKQNHVEGTMKRAGNLIAKLKKMAKDVGEKSREVIYLIIEKISLLISALKQQVHGMENKAKDLKIKTKSKAEE 720 
WD40-rpts                                                                                      

Query      721 VWRQTSLRADEIRNISIVKAKETVEEFKDRVGKLGEKFKSK 761 
WD40-rpts                                               

1 WD40-repeats found in QUERY=AT5G52410.2 (Len=761):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-61       2.79  230.04  0.04832       15.0%     -18.74

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-61     MASTMATWTPSSLQLRIALNHGIFKAPERAKMTKLSRRLRISCVAQNAEPGRDSGESNGSD

   WD40 Template    TGECLRTLSGHT--------SGVTSV-------------SFSPDGKRLVSGSEDGTIKVWD