Input parameters:

  Query = AT5G52250.1 (Len=385)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G52250.1, Len=385):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEALFCSEIPNNNIRSSINDLSSSSSYTWPMIMTSSSSSSSSPTIMNIENIPRCDWDLSLSAVVSSASTGSDAIGAIEFD 80  
WD40-rpts                    (_________________WD 1________________)       (_________________WD

Query       81 PTGEIIATGGIARKIRSYRLSSLLESRDDHVTASESYICTPAKLSSLKWRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSE 160 
WD40-rpts       2________________)(_______________________WD 3_______________________)   (_____

Query      161 RDEHGGRRIWSVDYTLYNGSLIGASGSDDGTVQMWDPRNGGTLEETVRPGGGAAICSVEFDPFGGSSIAVGCADRNAYVY 240 
WD40-rpts      _____________WD 4__________________)(____________________WD 5___________________

Query      241 DIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGSTDGSLKQWDIDNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSE 320 
WD40-rpts      )    (________________WD 6________________)(____________________WD 7____________

Query      321 NNQVFVYDKRWEEPVWVCGLGHTNRFGSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSGKQS 385 
WD40-rpts      _______)(________________________WD 8_______________________)    

8 WD40-repeats found in QUERY=AT5G52250.1 (Len=385):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-53       6.22  371.67  0.00061       10.0%     20.97
  WD 2:  Seg  2    61-99       8.34  459.34  4.0e-05       15.0%     55.12
  WD 3:  Seg  6   100-151      7.05  405.69  0.00021       22.5%     53.64
  WD 4:  Seg 10   155-196      6.96  402.08  0.00024       30.0%     51.06
  WD 5:  Seg 14   197-241      7.21  412.40  0.00017       25.0%     53.34
  WD 6:  Seg 18   246-283      8.26  455.95  4.5e-05       42.5%     49.97
  WD 7:  Seg 22   284-328      8.03  446.43  6.0e-05       35.0%     49.79
  WD 8:  Seg 26   329-381      5.85  356.51  0.00098       22.5%     43.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -R----------S----------SINDLSSSSS-YTWPMIM---T--S-S--SSSS--SSPTIMNIENIPR
   WD 2   61-99     -S----------A----------VVSSASTGSD-AIGAIEF---D--P-T--GEII--ATGGIARKIRSYR
   WD 3  100-151    LSSLLESRDDHVT----------ASESYICTPA-KLSSLKW---R--P-DFSGRVI--GSGDYDGVVTEYD
   WD 4  155-196    -Q----------V----------PVSERDEHGGRRIWSVDY---T--L-Y--NGSLIGASGSDDGTVQMWD
   WD 5  197-241    PR----------N------GGTLEETVRPGGGA-AICSVEF---D--PFG--GSSI--AVGCADRNAYVYD
   WD 6  246-283    -V----------D----------PLIVLDGHTK-TVTYARF---M----D--SHTI--VTGSTDGSLKQWD
   WD 7  284-328    ID-------NGRR----------VVRTYRGHVN-SRNFVGL---SVWR-H--GGLV--VSGSENNQVFVYD
   WD 8  329-381    KR----------WEEPVWVCGLGHTNRFGSDRR-FVSSVCLRQVD--E-D--WCTL--VAGGSDGALEIFS

   WD40 Template    TG----------E----------CLRTLSGHTS-GVTSVSF---S--P-D--GKRL--VSGSEDGTIKVWD