Input parameters:

  Query = AT5G51980.2 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G51980.2, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFDLNGGNKRVFNRLGGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGF 80  
WD40-rpts                                                                   (_________________W

Query       81 AGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALP 160 
WD40-rpts      D 1________________)          (__________WD 2__________)(___________________WD 3

Query      161 SGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLVVGT 240 
WD40-rpts      __________________)   (_______________WD 4______________)  (________________WD 5

Query      241 DLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSL 320 
WD40-rpts      _______________)       (________________WD 6_______________)   (________________

Query      321 ICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSLGLFIRFTER 400 
WD40-rpts      WD 7_______________)   (___________________WD 8___________________)   (_________

Query      401 GKIFAKQEIRAIQIGPGGIFFTGDGTGQVKVWKWCTEPTAALP 443 
WD40-rpts      __________WD 9__________________)          

9 WD40-repeats found in QUERY=AT5G51980.2 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    62-100      7.30  416.04  0.00015       12.5%     22.65
  WD 2:  Seg  5   111-136      2.91  235.06  0.04149       15.0%     28.86
  WD 3:  Seg  8   137-179      9.78  518.56  6.4e-06       37.5%     55.38
  WD 4:  Seg 12   183-217      5.02  322.01  0.00285       20.0%     43.44
  WD 5:  Seg 16   220-256      7.11  408.29  0.00020       30.0%     48.42
  WD 6:  Seg 20   264-300      7.77  435.63  8.4e-05       45.0%     42.07
  WD 7:  Seg 23   304-340      7.23  413.45  0.00017       35.0%     47.93
  WD 8:  Seg 27   344-387      7.03  404.95  0.00022       20.0%     51.41
  WD 9:  Seg 31   391-433      5.75  352.03  0.00112       17.5%     53.13

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-100    -GQ---GQGPGYTN-----KR-----VAEESGFAGPSHRRGPGFNGNSSSSWG
   WD 2  111-136    T--------------------------EKVCNFWVDGN-CTYGDKCRYLHCWS
   WD 3  137-179    KGESFALLTQLDGH-----EK-----LVSGIALPSGSDKLYTGSKDETLRVWD
   WD 4  183-217    -GQ---CTGVLKLG-----GE--------IGCVLSEGPWLLVGM-PNLVKAWN
   WD 5  220-256    -TN---ADQSLSGP-----VG-----QVYSLVVGTD--LLFAGTQDGSILAWR
   WD 6  264-300    -FE---PSASLTGH-----TL-----AV--VTLYVGANRLYSGSMDKTIKVWS
   WD 7  304-340    -LQ---CIQTLTDH-----SS-----VVMSLICWDQ--FLLSCSLDNTVKIWA
   WD 8  344-387    -GG---NLEVTYTH-----KEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYD
   WD 9  391-433    -LG---LFIRFTERGKIFAKQ-----EIRAIQIGPGG-IFFTGDGTGQVKVWK

   WD40 Template    TGE---CLRTLSGH-----TS-----GVTSVSFSPDGKRLVSGSEDGTIKVWD