Input parameters:

  Query = AT5G51980.1 (Len=437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G51980.1, Len=437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFDLNGGNKRVFNRLGGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGF 80  
WD40-rpts                                                                   (_________________W

Query       81 AGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALP 160 
WD40-rpts      D 1________________)(_______________WD 2_______________)(___________________WD 3

Query      161 SGSDKLYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLVVGT 240 
WD40-rpts      __________________)   (_______________WD 4______________)  (________________WD 5

Query      241 DLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSL 320 
WD40-rpts      _______________)          (______________WD 6______________)   (________________

Query      321 ICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSFTERGKIFAK 400 
WD40-rpts      WD 7_______________)   (___________________WD 8___________________)   (_________

Query      401 QEIRAIQIGPGGIFFTGDGTGQVKVWKWCTEPTAALP 437 
WD40-rpts      _______WD 9_______________)          

9 WD40-repeats found in QUERY=AT5G51980.1 (Len=437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    62-100      6.38  378.07  0.00050       12.5%     15.95
  WD 2:  Seg  5   101-136      4.91  317.60  0.00326       15.0%     28.03
  WD 3:  Seg  9   137-179      9.69  514.92  7.1e-06       37.5%     57.16
  WD 4:  Seg 13   183-217      5.02  322.14  0.00283       20.0%     46.12
  WD 5:  Seg 17   220-256      7.06  406.50  0.00021       30.0%     50.10
  WD 6:  Seg 22   267-300      6.88  398.68  0.00026       40.0%     48.41
  WD 7:  Seg 26   304-340      7.67  431.29  9.6e-05       35.0%     51.65
  WD 8:  Seg 30   344-387      6.98  402.88  0.00023       20.0%     52.80
  WD 9:  Seg 34   391-427      5.85  356.42  0.00098       17.5%     53.08

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-100    -GQ---GQGPGYTNKR-----VAEESGFAGPSHRRGPGFNGNSSSSWG
   WD 2  101-136    ------RFGGNRTVTK-----TEKVCNFWVDGN-CTYGDKCRYLHCWS
   WD 3  137-179    KGESFALLTQLDGHEK-----LVSGIALPSGSDKLYTGSKDETLRVWD
   WD 4  183-217    -GQ---CTGVLKLGGE--------IGCVLSEGPWLLVGM-PNLVKAWN
   WD 5  220-256    -TN---ADQSLSGPVG-----QVYSLVVGTD--LLFAGTQDGSILAWR
   WD 6  267-300    -------SASLTGHTL-----AVVTLYVG--ANRLYSGSMDKTIKVWS
   WD 7  304-340    -LQ---CIQTLTDHSS-----VVMSLICWDQ--FLLSCSLDNTVKIWA
   WD 8  344-387    -GG---NLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYD
   WD 9  391-427    -FT---ERGKIFAKQE------IRAIQIGPGG-IFFTGDGTGQVKVWK

   WD40 Template    TGE---CLRTLSGHTS-----GVTSVSFSPDGKRLVSGSEDGTIKVWD