Input parameters:

  Query = AT5G50970.1 (Len=512)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G50970.1, Len=512):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELCTNPKKPKLKEEDEEEEANVSCREEQEEVLVALVEHRSNEIERLNNHISNYQTKLIEAERSLQNSKAKLAQLRGVA 80  
WD40-rpts                                                                                      

Query       81 VPSISGAKKDHKPLKTLRNVNVSEDYASPSPSKTLRPSDSSDHPRSSCGSSVSKAKTVVVKQKSETSRDSPNVKDRGIKR 160 
WD40-rpts                                                                  (___________________

Query      161 KFEQKEHKELIRLIARNSSPTTIKCHTSNQISSQHKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQPGRLVASLLSTTD 240 
WD40-rpts      __WD 1____________________)________________WD 2_________________)          (____

Query      241 CLSRKQRRWAEDMAWHPSGNTLFSVYTADDGDSQISILNLNKTREVTFLENKPHVKGIINNIKFMPWENTCFVTGGSDHA 320 
WD40-rpts      _______________WD 3___________________)   (___________________WD 4______________

Query      321 VVLWNESDDEENKWKSKPLHRNLHSAAVMGVDGMKNKNVILSVGADKRIYGFDVQVGRADYKHQIDYKCMSVLANPCDFN 400 
WD40-rpts      ____)(_____________________WD 5_____________________)     (_________________WD 6

Query      401 LFMVQSGEPEKQLRLFDIRLRKTELHSFGWKQDSSESQSALINQSWSPDGLYITSGSVDPVIHVFDIRYNARKPTQSIKA 480 
WD40-rpts      ________________)          (_________________WD 7________________)     (________

Query      481 HQKRVFKAEWHYSQPLLISISSDLNIGLHKIS 512 
WD40-rpts      _________WD 8________________)  

8 WD40-repeats found in QUERY=AT5G50970.1 (Len=512):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   141-187      6.22  371.71  0.00061       12.5%     18.66
  WD 2:  Seg  5   186-225      7.51  424.99  0.00012       20.0%     43.39
  WD 3:  Seg  9   236-279      7.63  429.75  0.00010       15.0%     39.25
  WD 4:  Seg 12   283-325      6.65  389.32  0.00035       17.5%     55.39
  WD 5:  Seg 16   326-373      7.67  431.43  9.5e-05       17.5%     46.56
  WD 6:  Seg 19   379-417      6.57  385.94  0.00039       10.0%     40.12
  WD 7:  Seg 24   428-466      9.30  498.73  1.2e-05       37.5%     45.03
  WD 8:  Seg 27   472-510      8.22  454.37  4.7e-05       17.5%     51.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  141-187    KQK--------SETSRDSPNVKDRGIK---RKFEQKEHKE-LIRLIAR----NSSPTTIKCHT
   WD 2  186-225    -HT--------SNQISS-------QHK---RKLRSLILCPVNEQLFAT----SSLDGMVSLWQ
   WD 3  236-279    LST--------TDCLSR-------KQR---RWAEDMAWHP-SGNTLFSVYTADDGDSQISILN
   WD 4  283-325    -TR--------EVTFLE-------NKPHVKGIINNIKFMPWENTCFVT----GGSDHAVVLWN
   WD 5  326-373    ESDDEENKWKSKPLHRN-------LHS---AAVMGVDGMK-NKNVILS----VGADKRIYGFD
   WD 6  379-417    -AD--------YKHQID-------YKC---MSVLANPCDF-NLFMVQS----GEPEKQLRLFD
   WD 7  428-466    FG---------WKQDSS-------ESQ---SALINQSWSP-DGLYITS----GSVDPVIHVFD
   WD 8  472-510    -RK--------PTQSIK-------AHQ---KRVFKAEWHY-SQPLLIS----ISSDLNIGLHK

   WD40 Template    TGE--------CLRTLS-------GHT---SGVTSVSFSP-DGKRLVS----GSEDGTIKVWD