Input parameters:

  Query = AT5G50650.1 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G50650.1, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASNQQPPSNLQTYGVPIYAVDWILEEAVRSKITKDQDDDDDDGSSSSSYIVLSGGGGEGRSGIPNVILICRVDLHTNSL 80  
WD40-rpts                                 (_________________WD 1________________)              

Query       81 SEQPIGRRVIGTDLPYRMAIHPRQGGLICALPNSCRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATG 160 
WD40-rpts       (________________WD 2________________)            (_________________WD 3_______

Query      161 AEDGTLRVFEWPSMKTLLNESKTHASVKSLTFSESGKFLVSLGAPLCRVWDVNASAAIASLSKEKDEMFASCRFSVDNSG 240 
WD40-rpts      _________)   (________________WD 4________________)   (____________________WD 5_

Query      241 SEVLYVAANTQRGGSIITWDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLIIDSTKMQTNQIVKKAHLGL 320 
WD40-rpts      ___________________)(___________________WD 6__________________)(________________

Query      321 VTALTFSPDSRCLVSVSFDSRARLTVIKQKGEKRRVYLWVAALLFVLVYVVLYYLMVAMGIIH 383 
WD40-rpts      ___WD 7__________________)                                     

7 WD40-repeats found in QUERY=AT5G50650.1 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    28-66       3.69  267.17  0.01552       12.5%     -9.53
  WD 2:  Seg  4    82-119      6.29  374.40  0.00056       10.0%     49.19
  WD 3:  Seg  8   132-170      8.97  485.00  1.8e-05       32.5%     54.66
  WD 4:  Seg 12   174-211      7.90  441.19  7.0e-05       35.0%     51.17
  WD 5:  Seg 16   215-260      6.24  372.35  0.00060       25.0%     43.56
  WD 6:  Seg 20   261-303      8.72  474.96  2.5e-05       25.0%     55.85
  WD 7:  Seg 24   304-346      8.58  469.03  3.0e-05       30.0%     52.68

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-66     -A---V---RSKITKDQDDDD-DDGSSSSSYIV------LSGGGGEGRSGIPN
   WD 2   82-119    -E---Q---PIGRRVIGTDLP-YRMAIHPRQGG------LICAL-PNSCRLFD
   WD 3  132-170    -S---E---KVVKELKDVGQQ-LSLSFNQDGTV------LATGAEDGTLRVFE
   WD 4  174-211    -M---K---TLLNESKTHASV-KSLTFSESGKF------LVSLGAP-LCRVWD
   WD 5  215-260    -S---A---AIASLSKEKDEMFASCRFSVDNSGSEVLYVAANTQRGGSIITWD
   WD 6  261-303    TTSWRR---RSSKLIKRNNSI-SAFNVSADGKL------LAVGTLEGDVLIID
   WD 7  304-346    ST---KMQTNQIVKKAHLGLV-TALTFSPDSRC------LVSVSFDSRARLTV

   WD40 Template    TG---E---CLRTLSGHTSGV-TSVSFSPDGKR------LVSGSEDGTIKVWD