Input parameters:

  Query = AT5G50230.1 (Len=509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G50230.1, Len=509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQCYKAQSRLSEQLVIEVAESR 80  
WD40-rpts                                                                                      

Query       81 TSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKTVDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQK 160 
WD40-rpts                                                                                      

Query      161 MQDAERLNEANDLYEEMLAKLKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTL 240 
WD40-rpts                                                            (_________________WD 1____

Query      241 FTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKF 320 
WD40-rpts      ____________)   (_________________WD 2________________)   (_________________WD 3

Query      321 SSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVS 400 
WD40-rpts      _________________)   (________________WD 4________________)   (_________________

Query      401 LSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQ 480 
WD40-rpts      WD 5________________)   (___________________WD 6__________________)   (_________

Query      481 TSPILCCSWSGIGKPLASADKNGYVCTWT 509 
WD40-rpts      ________WD 7________________)

7 WD40-repeats found in QUERY=AT5G50230.1 (Len=509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   215-253      9.70  515.46  7.0e-06       27.5%     47.31
  WD 2:  Seg  8   257-295      9.82  520.22  6.1e-06       20.0%     54.59
  WD 3:  Seg 12   299-338      9.29  498.21  1.2e-05       42.5%     56.74
  WD 4:  Seg 16   342-379      8.06  447.53  5.8e-05       35.0%     54.26
  WD 5:  Seg 20   383-421     10.27  538.87  3.4e-06       40.0%     53.19
  WD 6:  Seg 24   425-467      8.34  459.00  4.1e-05       32.5%     52.63
  WD 7:  Seg 28   471-509      9.17  493.42  1.4e-05       30.0%     46.43

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  215-253    STCANRIHAHEGGCGS----IVFEY-NSGTLFTGGQDRAVKMWD
   WD 2  257-295    GTLIKSLYGSLGNILD----MAVTH-DNKSVIAATSSNNLFVWD
   WD 3  299-338    GRVRHTLTGHTDKVCA----VDVSKFSSRHVVSAAYDRTIKLWD
   WD 4  342-379    GYCTNTV-LFTSNCNA----ICLSI-DGLTVFSGHMDGNLRLWD
   WD 5  383-421    GKLLSEVAGHSSAVTS----VSLSR-NGNRILTSGRDNVHNVFD
   WD 6  425-467    LEICGTLRASGNRLASNWSRSCISP-DDDYVAAGSADGSVHVWS
   WD 7  471-509    GNIVSILKEQTSPILC----CSWSG-IGKPLASADKNGYVCTWT

   WD40 Template    GECLRTLSGHTSGVTS----VSFSP-DGKRLVSGSEDGTIKVWD