Input parameters:

  Query = AT5G50120.1 (Len=388)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G50120.1, Len=388):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIQFQESEEEPDFSQEDHLTSSSQPLHQCIATLVCHTASYISSLTLAGKRLYTGSNDGVVRLWNANTLETLAEASSNGDV 80  
WD40-rpts                                (________________WD 1________________)             (__

Query       81 ITGERGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAKCLMPKNQVEIRRHKKAS 160 
WD40-rpts      ______________WD 2_______________)(__________________WD 3_________________)(____

Query      161 WVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINE 240 
WD40-rpts      ____________WD 4________________)     (________________WD 5_______________)     

Query      241 ENVKKKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDILCS 320 
WD40-rpts              (_________________WD 6_________________)(___________________WD 7________

Query      321 GSADKTVRLWKCSAKDYSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVKVWQVLVPA 388 
WD40-rpts      __________)(_______________________WD 8_______________________)     

8 WD40-repeats found in QUERY=AT5G50120.1 (Len=388):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    27-64       7.35  418.34  0.00014       40.0%     54.45
  WD 2:  Seg  6    78-114      7.47  423.35  0.00012       25.0%     50.81
  WD 3:  Seg 10   115-155      6.73  392.83  0.00032        2.5%     47.91
  WD 4:  Seg 14   156-193      8.87  480.90  2.1e-05       30.0%     52.35
  WD 5:  Seg 18   199-235      7.31  416.68  0.00015       30.0%     42.11
  WD 6:  Seg 21   249-288      8.08  448.48  5.6e-05       37.5%     49.29
  WD 7:  Seg 25   289-331      7.29  415.89  0.00015       32.5%     51.77
  WD 8:  Seg 29   332-383      7.39  420.11  0.00014       30.0%     54.57

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-64     -H----Q-----CI-ATLVCHTASYIS-SLT-LA--------GKRLYTGSNDGVVRLWN
   WD 2   78-114    -G----D-----VI-TGERGGGGAVKSLVIL-AD--------K--LFTAHQDHKIRVWK
   WD 3  115-155    IN----D-----VVEEDVGGKKYMHLATMPT-IS--------DRFAKCLMPKNQVEIRR
   WD 4  156-193    ------H-----KK-ASWVHHVDAVSGLALS-RD--------GTLLYSVSWDRTLKIWR
   WD 5  199-235    CL----E-----SF---TNAHDDAINAVALS-EN--------GD-IYTGSSDQRIKVWR
   WD 6  249-288    -H----S-----LV-AILSEHNSGINALALSGTN--------GSLLHSGGSDGSILVWE
   WD 7  289-331    RD----DGGDIVVV-GMLRGHTESVLCLAVV-SD----------ILCSGSADKTVRLWK
   WD 8  332-383    CSAKDYS-----CL-AMLEGHLGPVKCLTGA-FRDSRKADEASYHIYSGGLDSQVKVWQ

   WD40 Template    TG----E-----CL-RTLSGHTSGVTSVSFS-PD--------GKRLVSGSEDGTIKVWD