WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT5G49430.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT5G49430.1 (Len=1677) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT5G49430.1, Len=1677): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLLSSGPCQKTYALLRHELLEHE 80
WD40-rpts
Query 81 LLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTL 160
WD40-rpts
Query 161 LGTGSFSLLSSDKEIVGSDLKPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
WD40-rpts (____________________WD 1___________________) (_____
Query 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRLPDGL 320
WD40-rpts ____________WD 2________________) (_________________WD 3________________) (_
Query 321 PVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPPSPDGKNSGPSSSNAQQSHQIFCCA 400
WD40-rpts _________________WD 4__________________) (_______________________WD 5__
Query 401 FNASGSVFVTGSSDTLARVYSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKN 480
WD40-rpts ____________________) (____________________________WD 6_______
Query 481 SWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIAWSLDNRFVL 560
WD40-rpts ____________________) (_________________WD 7_____
Query 561 AAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPD 640
WD40-rpts ___________) (_________________WD 8_________________) (_________________WD 9
Query 641 GTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQT 720
WD40-rpts ________________) (_________________WD10________________)
Query 721 TFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLDLAEPLPEFIDVMEWEPEVDILSDENDSEYNVPEEYSSG 800
WD40-rpts (______________WD11_____________)
Query 801 KEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKE 880
WD40-rpts
Query 881 SKRKSSKSKSSRPRRAAARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKTI 960
WD40-rpts
Query 961 LVCDSDDGAQQCDIRETHTAERRRLVLRFPVRNSDKLTLLENLPGSSCDVPSPTLGNGCTEDSRIPGNQFEGLDVSKVKW 1040
WD40-rpts
Query 1041 GMVKARTTKRIRGEAISSHELMGSDPEGKENNVKEDSNHRGNGVTAPSCLELKTDIDDMAVDTDTVISNGLPNGGKRYPE 1120
WD40-rpts
Query 1121 LDGSPSRVADDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGSDALNDGFEDAKC 1200
WD40-rpts
Query 1201 DLTLDCQKDGVVGTEISLRNDCVLELNPQICDALSIANDVPVSHSHPKRMFDFVYRRKSRKHKNNLDRDAALTKEVSPGS 1280
WD40-rpts
Query 1281 CSQDHGSGSKSHEGASNGFHGTELNGLEKSEGSLTHIQDKISDSRGNQNSQEELRSASGATLRLRSTRNRKSTYPFSETK 1360
WD40-rpts
Query 1361 PIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNFSSLREVAPWTSIKGGNIKAVEICKVESLEYA 1440
WD40-rpts
Query 1441 TLPGSGDSCCKMILKVIDPNSEVFNKAFKLTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGR 1520
WD40-rpts
Query 1521 ILAVKPKSPDFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLETSDKRTQDSFGLRK 1600
WD40-rpts
Query 1601 LNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALRHDVSVMLSNAETFFGRNKSVAAKISNLSNWFDRTLPSS 1677
WD40-rpts
 11 WD40-repeats found in QUERY=AT5G49430.1 (Len=1677): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 178-222 5.11 325.69 0.00254 15.0% 41.64 WD 2: Seg 7 235-273 8.17 451.97 5.0e-05 27.5% 52.74 WD 3: Seg 11 277-315 8.73 475.25 2.4e-05 30.0% 54.23 WD 4: Seg 15 319-360 8.67 472.66 2.7e-05 45.0% 52.86 WD 5: Seg 20 371-421 6.44 380.52 0.00046 17.5% 38.61 WD 6: Seg 23 441-501 3.64 265.21 0.01648 30.0% 46.89 WD 7: Seg 28 534-572 6.49 382.65 0.00043 22.5% 53.23 WD 8: Seg 32 576-615 7.50 424.51 0.00012 32.5% 55.75 WD 9: Seg 36 619-657 5.51 342.22 0.00152 17.5% 49.82 WD10: Seg 39 659-697 3.93 276.93 0.01148 7.5% 35.87 WD11: Seg 43 722-754 3.41 255.33 0.02234 10.0% 12.25Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 178-222 SDLKPPPIG-----------MRWPHMHADQVRGISLREI---GG--------------------------GF-ARHHRAPSIRAAC WD 2 235-273 -M-----QN-----------IKRLRGHRNAVYCAILDRS---GR--------------------------YV-ITGSDDRLVKVWS WD 3 277-315 -A-----YC-----------LASCRGHEGDITDLAVSSN---NI--------------------------FI-ASASNDCVIRVWR WD 4 319-360 -G-----LP-----------VSVLRGHTGAVTAIAFSPRPGSPY--------------------------QL-LSSSDDGTCRIWD WD 5 371-421 YV-----PRPPSPDGKNSGPSSSNAQQSHQIFCCAFNAS---GS--------------------------VF-VTGSSDTLARVYS WD 6 441-501 ---------------------DVLAGHENDVNYVQFSGC---AAGSKFSVTDYSKDENVPKFKNSWFCHDNI-VTCSRDGSAIIWI WD 7 534-572 -G-----GP-----------RQRILPTPRGVNMIAWSLD---NR--------------------------FV-LAAIMDCRICVWN WD 8 576-615 -G-----SL-----------VHSLTGHTASTYVMDVHPF---NP--------------------------RIAMSAGYDGKTIVWD WD 9 619-657 -G-----IP-----------IQIYDISHYKLVDGKFSPD---GT--------------------------SI-ILSDDVGQLYILS WD10 659-697 -G-----QG-----------DSQKDAKYDQFFLGDYRPL---IQ--------------------------DT-YGNVLDQESQLQP WD11 722-754 -----------------------FQKRRLGALGKEWRPS---SL--------------------------KL-AVGPDITLDRDYQ WD40 Template TG-----EC-----------LRTLSGHTSGVTSVSFSPD---GK--------------------------RL-VSGSEDGTIKVWD |
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