Input parameters:

  Query = AT5G49200.1 (Len=419)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G49200.1, Len=419):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDYKAPRRYYSHGVVARQQDFATDIVTRRRPYVPYDRPNKFSRSLVWTSKEYKSPEGNNMPRTNDVSPKPPVLGLARKNA 80  
WD40-rpts                                  (____________________WD 1___________________)     (_

Query       81 ACGPMRSSSLRKWVCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDC 160 
WD40-rpts      _______________WD 2________________)    (_________________WD 3________________) 

Query      161 NSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKAT 240 
WD40-rpts        (_______________WD 4______________)(__________________WD 5_________________)  

Query      241 TDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTI 320 
WD40-rpts             (________________WD 6_______________)   (________________WD 7____________

Query      321 KVWAYSENGILKVVQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLPSFQERGRMFSTHTIATLTIGPQGLLF 400 
WD40-rpts      ___)(_____________________WD 8_____________________)(_________________WD 9______

Query      401 SGDESGNLRVWTLAAGNKV 419 
WD40-rpts      ___________)       

9 WD40-repeats found in QUERY=AT5G49200.1 (Len=419):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    29-73       5.17  328.03  0.00236       10.0%     13.70
  WD 2:  Seg  4    79-116      6.76  394.08  0.00030       12.5%     42.63
  WD 3:  Seg  8   121-159      9.35  501.03  1.1e-05       30.0%     53.43
  WD 4:  Seg 12   163-197      4.73  309.95  0.00414       17.5%     44.89
  WD 5:  Seg 16   198-238      6.29  374.48  0.00056       20.0%     53.01
  WD 6:  Seg 20   248-284      7.80  436.81  8.1e-05       42.5%     45.49
  WD 7:  Seg 24   288-324      8.18  452.68  4.9e-05       47.5%     53.11
  WD 8:  Seg 28   325-372      6.87  398.40  0.00027       22.5%     46.29
  WD 9:  Seg 32   373-412      5.98  361.68  0.00083       27.5%     50.57

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-73     RR---P-----YVPYDRPNKFSRSLVWTSKEYKSPEGNN---MPRTNDVSPKPPVL
   WD 2   79-116    -N---A-----AC-----GPMRSSSLRKWVCKYWKDGK----CKRGEQCQFLHSWS
   WD 3  121-159    -L---A-----MV-----ASLEGHNKELKGIALPEGSDK---LFSVSIDGTLRVWD
   WD 4  163-197    -G---Q-----CV-----HSINLDAE---AGSLISEGPW---VFLGL-PNAIKAFN
   WD 5  198-238    VQTSQD-----LH-----LQAAGVVGQVNAMTIA--NGM---LFAGTSSGSILVWK
   WD 6  248-284    -F---K-----YL-----TSLEGHSGEV--TCFAVGGQM---LYSGSVDKTIKMWD
   WD 7  288-324    -L---Q-----CI-----MTLKQHTGTVTSLLCW--DKC---LISSSLDGTIKVWA
   WD 8  325-372    YS---ENGILKVV-----QTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFD
   WD 9  373-412    LP---S-----FQ----ERGRMFSTHTIATLTIGPQG-L---LFSGDESGNLRVWT

   WD40 Template    TG---E-----CL-----RTLSGHTSGVTSVSFSPDGKR---LVSGSEDGTIKVWD