Input parameters:

  Query = AT5G47020.1 (Len=1421)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G47020.1, Len=1421):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGLVFLCVLLVSTPCFSLSQYGVTEFESSVRLFSDEASGNSTSSPISVTCQDLDGVGSLNTTCTLNSNLRFDSDVYVYG 80  
WD40-rpts                                                                                      

Query       81 TGNLNILAHVLVDCPVEGCMITFNVSGTIHLGQSARIVAGSVVFSAINLTMDSNSSIYTTALAGPPPSQTSGTPYGIDGA 160 
WD40-rpts                                                                                      

Query      161 GGGHGGRGASCVKSNKTTYWGGDVYAWSSLHDPWSYGSEGGVKLSTKNIRGKGGGRVKLILTDTVHVNGTVSADGGDAGE 240 
WD40-rpts                                                                                      

Query      241 EGGGGSGGSICIRAVKLKGYGKISASGGRGWGGGGGGRISLDCYSIQEDVKVFVHGGASIGCPKNAGAAGTYFNAELVSL 320 
WD40-rpts                                                                                      

Query      321 RVGNDNMTTETETPLLDFPTRPLWSNIYVDNNAKVLVPLLWTRMQVGGQISLYRGSSIVFGLSKYPISEFELVAEELLMS 400 
WD40-rpts                                                                                      

Query      401 NSVIKVFGALRLVTKMLLMLNSVIQIDGEGNPAVPSSVLEVRNLAVLKGKSVITSNTNLGVYGQGMLTLSGPGDAIKGQR 480 
WD40-rpts                                                                                      

Query      481 LSLSQFYNITVGPGSILQAPLDDYESKNAVTQTLCESKTCPIDLISPPDDCHVNYTLSFSLQICRVEDILVRGLVKGSII 560 
WD40-rpts                                                                                      

Query      561 QIHRARTVVVTDDGLITASGFGCSAGLGKGLYSNGAGSGAGHGGRGGSGIFNGRVCNGGHTYGDPDFPCELGSGAESPDK 640 
WD40-rpts                                                                                      

Query      641 SYGNVTGGGMIVIGSIQFPLLTLNLRGSLSSDGQSLWKPTANGNRSLVGGVGGGSGGTILLFLQMLELSKNSSLSVRGGR 720 
WD40-rpts                                                                                      

Query      721 GGPLGGGGGGGGRLHFHWDMLHTGDEYSPVAIVKGSISNRGGAGDNGGRFGEEGTMTGKKCPKGLYGTFCLECPIGTYKN 800 
WD40-rpts                                                                                      

Query      801 VEGSDKRLCTPCPPEHLPSRAKFVYVRGGVSEPVCPYKCVSEKYRLPNCYTPLEELVYTFGGPLPFTLLLSCVVVVLGLL 880 
WD40-rpts                                                                                      

Query      881 LSTLSIKLLRLSFYGANSIEHQSAHCLPHLLSLSEVRGAKSEDTQTHAYRMYFMGPNNFREPWHLPYSPPGAIIEIVYED 960 
WD40-rpts                                                                                      

Query      961 AFNSFINEINSTAAYDWWEGSVHSILSVLANPCAWSWKQWRRRRKIHRLQEYVKSQYDHSCLRSCRSRALYKGMKVGATP 1040
WD40-rpts                        (________________________________WD 1_________________________

Query     1041 DLMVAYIDFFLGGDEKRVDMVSIIQKRFPMCILFGGDGSYMSPYSLHSDTLLTNLLGQHIPPSVWHRFVAGLNAQLRTVR 1120
WD40-rpts      _______)                                                                        

Query     1121 HGSIRSALLPVIRWINSHGNPQLEFHGVRIELGWFQATASGYYQLGILVFVGDFPLNTVNRSLSFSRSDDESPGNNSACP 1200
WD40-rpts                                                                                      

Query     1201 SKSLIELQQNLIQPGHGLSRKRINGGINGGLINEISLESLEYRRDLLFPFSLLLNNTRPVGRQDTLLRFISILLLADLSV 1280
WD40-rpts                                                                                      

Query     1281 TLLALLQFYWLALAAFLAILLILPLSLLCPFPAGLNALLSKEMRRASLTRIYGLWNATSLTNVIVAFICGVIHSGFFTDE 1360
WD40-rpts                                                                                      

Query     1361 LPNIWNAIRDDDKWWVLPTFLLLLKSIQARFLDWHVANLEVPDFSLLCPDPDTFWAYESGA 1421
WD40-rpts                                                                   

1 WD40-repeats found in QUERY=AT5G47020.1 (Len=1421):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 45   979-1048     3.21  247.19  0.02866       20.0%     29.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  979-1048   EGSVHSILSVLANPCAWSWKQWRRRRKIHRLQEYVKSQYDHSCLRSCRSRALYKGMKVGATPDLMVAYID

   WD40 Template    TGECLRTLS------------------------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD