Input parameters:

  Query = AT5G45760.2 (Len=334)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G45760.2, Len=334):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEPVSSLCFKTGNENILYASCGN 80  
WD40-rpts         (__________________WD 1_________________)   (_________________WD 2___________

Query       81 EIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWR 160 
WD40-rpts      _____)        (_________________WD 3________________)(___________________WD 4___

Query      161 PWEGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESELSRKGTSSKGSSSSSSNNVVKRVCL 240 
WD40-rpts      _______________)(_______________WD 5______________)                       (_____

Query      241 DYSVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLV 320 
WD40-rpts      _______________WD 6___________________)   (______________________WD 7___________

Query      321 VCDTTRVVKVYSIS 334 
WD40-rpts      ___________)  

7 WD40-repeats found in QUERY=AT5G45760.2 (Len=334):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       8.26  456.01  4.4e-05       35.0%     49.51
  WD 2:  Seg  5    48-86       8.69  473.62  2.6e-05       20.0%     58.60
  WD 3:  Seg  9    95-133      8.24  454.85  4.6e-05       20.0%     53.90
  WD 4:  Seg 13   134-176      7.66  430.91  9.7e-05       25.0%     49.12
  WD 5:  Seg 17   177-211      3.12  243.64  0.03195       10.0%     31.88
  WD 6:  Seg 22   235-279      8.33  458.75  4.1e-05       40.0%     43.87
  WD 7:  Seg 26   283-332      4.37  295.08  0.00655       12.5%     43.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     AME---EPRKLRGHKSTA-TCCIAS---RD-RPGIVLTSGEDG----------CICWFD
   WD 2   48-86     -KD---VQFIIDVGTEPV-SSLCFK---TG-NENI-LYASCGN----------EIKSFD
   WD 3   95-133    -WK---PLESYNYNKDEV-NQVVCN---GR-SSFL-ASADDSG----------DVKIID
   WD 4  134-176    LGQKCLYKTLRAGHTSIC-SSVQFI---PW-RPWE-GSDTNNN----------SGQCLN
   WD 5  177-211    ---------PAFVHSIAI-PEMDMV---DKLDKIC-AVARGDG----------IVNLIN
   WD 6  235-279    VKR-VCLDYSVGGHNSAV-SCVAFSLFQEK-GRFL-ISGGNDK----------TVKIWD
   WD 7  283-332    -CL---DPNNNNNNSDLLHLNINLS---KK-VNWL-CTNQSDSENLVVCDTTRVVKVYS

   WD40 Template    TGE---CLRTLSGHTSGV-TSVSFS---PD-GKRL-VSGSEDG----------TIKVWD