Input parameters:

  Query = AT5G45760.1 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G45760.1, Len=360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEPVSSLCFKTGNENILYASCGN 80  
WD40-rpts          (_________________WD 1_________________)   (_________________WD 2___________

Query       81 EIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWR 160 
WD40-rpts      _____)        (_________________WD 3________________)(___________________WD 4___

Query      161 PWEVITGGLDSKLVLWDFSKGRSQKIIDFGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINIES 240 
WD40-rpts      ________________)   (____________________WD 5___________________)   (___________

Query      241 ELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSD 320 
WD40-rpts      __WD 6_____________)(____________________WD 7___________________)   (___________

Query      321 LLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVKVYSIS 360 
WD40-rpts      ___________WD 8______________________)  

8 WD40-repeats found in QUERY=AT5G45760.1 (Len=360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       8.08  448.33  5.6e-05       35.0%     47.55
  WD 2:  Seg  5    48-86       8.72  474.75  2.5e-05       20.0%     57.56
  WD 3:  Seg  9    95-133      8.35  459.61  4.0e-05       20.0%     51.19
  WD 4:  Seg 13   134-177      7.60  428.54  0.00010       32.5%     50.53
  WD 5:  Seg 17   181-225      6.03  363.94  0.00077       10.0%     39.74
  WD 6:  Seg 20   229-260      2.81  230.70  0.04737       17.5%     41.87
  WD 7:  Seg 24   261-305      8.45  463.58  3.5e-05       40.0%     43.66
  WD 8:  Seg 28   309-358      4.67  307.45  0.00447       15.0%     44.00

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     -ME---EPRKLRGHK------STA-TCCIAS---R----------DRPGIVLTSGEDGCICWFD
   WD 2   48-86     -KD---VQFIIDVGT------EPV-SSLCFK---T----------GNENI-LYASCGNEIKSFD
   WD 3   95-133    -WK---PLESYNYNK------DEV-NQVVCN---G----------RSSFL-ASADDSGDVKIID
   WD 4  134-177    LGQKCLYKTLRAGHT------SIC-SSVQFI---P---------WRPWEV-ITGGLDSKLVLWD
   WD 5  181-225    -GR---SQKIIDFGSDTNNNSGQC-LNPAFV---H----------SIAIP-EMDMVDKLDKICA
   WD 6  229-260    -GD---GIVNLINIE------SEL-SRKGTS---S----------KGS---SSSSSNNV-----
   WD 7  261-305    VKR-VCLDYSVGGHN------SAV-SCVAFSLFQE----------KGRFL-ISGGNDKTVKIWD
   WD 8  309-358    -CL---DPNNNNNNS------DLLHLNINLS---KKVNWLCTNQSDSENL-VVCDTTRVVKVYS

   WD40 Template    TGE---CLRTLSGHT------SGV-TSVSFS---P----------DGKRL-VSGSEDGTIKVWD