Input parameters:

  Query = AT5G43920.1 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G43920.1, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDNSM 80  
WD40-rpts                                                                                      

Query       81 DDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYSKEMESGEVDNCLVLDLRRKLLVEL 160 
WD40-rpts                                                                                      

Query      161 EKLIPLPIVIPERRLEHLVETAVMDQIDTCMYHNSCDAVSLYKDHCCGRDQIPSETVQILVAHKNEVWFVQFSNSGKYLA 240 
WD40-rpts                                                           (_________________WD 1_____

Query      241 TASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCA 320 
WD40-rpts      ___________)      (_________________WD 2________________)   (___________________

Query      321 WFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTRIPKVVDLAVTPDGESMITVFSDKEIRILNLETKVERVISEEQPI 400 
WD40-rpts      WD 3__________________)   (_________________WD 4________________) (_____________

Query      401 TSLSISGDGKFFIVNLSCQEIHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEV 480 
WD40-rpts      ____WD 5________________)    (__________________WD 6__________________)   (_____

Query      481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGKPNKPLN 523 
WD40-rpts      ____________WD 7_________________)         

7 WD40-repeats found in QUERY=AT5G43920.1 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   214-252      8.94  483.84  1.9e-05       35.0%     54.28
  WD 2:  Seg  8   259-297      9.33  499.86  1.1e-05       35.0%     53.45
  WD 3:  Seg 12   301-343      7.21  412.64  0.00017       40.0%     56.94
  WD 4:  Seg 16   347-385      8.31  457.92  4.2e-05       17.5%     58.10
  WD 5:  Seg 19   387-425      7.57  427.37  0.00011       25.0%     49.96
  WD 6:  Seg 23   430-471      7.47  423.10  0.00012       27.5%     55.49
  WD 7:  Seg 27   475-514      8.90  482.27  2.0e-05       40.0%     51.04

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  214-252    SETVQILVAHKNE---VWFVQFSN-SGKYLATASSD--CTAIIWK
   WD 2  259-297    VELKHTLESHQNP---VSFVSWSP-DDTKLLTCGNA--EVLKLWD
   WD 3  301-343    GVLRHTFGNNNTG-FTVSSCAWFP-DSTRLVCGSSDPERGIVMWD
   WD 4  347-385    NEIKAWRGTRIPK---VVDLAVTP-DGESMITVFSD--KEIRILN
   WD 5  387-425    ETKVERVISEEQP---ITSLSISG-DGKFFIVNLSC--QEIHLWD
   WD 6  430-471    WKQPLKFSGHRQSKYVIRSCFGGL-DSSFIASGSED--SQVYIWN
   WD 7  475-514    TKPLEVLSGHSMT---VNCVSWNPKNPRMLASASDD--QTIRIWG

   WD40 Template    GECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSED--GTIKVWD