Input parameters:

  Query = AT5G42010.1 (Len=709)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G42010.1, Len=709):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTRGNEEEEDWFSDAREEVSSVSDCNSEVADDFVQATGDLDLWTMNPESVTNRRQKFFQSMGFSFKKRDFDLDLDLLGD 80  
WD40-rpts            (_________________WD 1________________)          (_______________WD 2_____

Query       81 SSSDHIPVSKQLTSVSETDHEEEEKEEKLLRNESTSSGSSVSSFSTASLAEAFSFRGSFQNRAKNIDDQILLTRDYSSNS 160 
WD40-rpts      __________)    (_________________WD 3________________)       (_______________WD 

Query      161 SSIAEGLSESDSSRFDSYGDLPNSPMSRYEESPKKGAKGWLKKLGVLTHVLDKTEECTDGESTRSSIRRQLTRVQSFKKQ 240 
WD40-rpts      4______________)                     (_________________WD 5________________)    

Query      241 FKELSSLCVGQEFSAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDKSQIEPLK 320 
WD40-rpts            (_________________WD 6________________)(___________________WD 7___________

Query      321 TENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRV 400 
WD40-rpts      _______)                        (________________WD 8________________)   (______

Query      401 FSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQL 480 
WD40-rpts      ___________WD 9_________________)(__________________WD10_________________)      

Query      481 QLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTICKLKKASSLRTTLMSPTFASFTSDGKHIVS 560 
WD40-rpts              (________________WD11_______________)       (_________________WD12______

Query      561 TIEESGIHVWDFSQPNKKASSQKPKTIRSYEGFLSRNVSVAIPWLGQGKEDSIIADLEKSFAHFPVPLDYFSPMKGATTW 640 
WD40-rpts      __________)        (_________________WD13________________)   (_________________W

Query      641 PEEKLGVVAGTAAAAVSATVSSRSKLRLLKSVCQNVHGSTPHLWGLVIVTATWDGSIRVFHNYGLPIRV 709 
WD40-rpts      D14________________)  (_________________WD15________________)        

15 WD40-repeats found in QUERY=AT5G42010.1 (Len=709):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       6.26  373.21  0.00058       17.5%     35.66
  WD 2:  Seg  4    56-91       4.59  304.21  0.00494       12.5%     26.39
  WD 3:  Seg  6    96-134      5.89  357.96  0.00093       10.0%     42.63
  WD 4:  Seg  9   142-176      6.22  371.71  0.00061       10.0%     42.27
  WD 5:  Seg 12   198-236      5.91  358.68  0.00091       17.5%     41.94
  WD 6:  Seg 16   247-285      9.18  494.03  1.4e-05       32.5%     51.67
  WD 7:  Seg 20   286-328      5.77  353.14  0.00108       15.0%     28.39
  WD 8:  Seg 24   353-390      7.29  415.98  0.00015       30.0%     47.81
  WD 9:  Seg 28   394-433      8.63  471.31  2.8e-05       37.5%     53.41
  WD10:  Seg 32   434-474      7.89  440.79  7.1e-05       25.0%     58.21
  WD11:  Seg 37   489-525      6.10  366.50  0.00072       20.0%     47.82
  WD12:  Seg 40   533-571      8.68  473.20  2.6e-05       35.0%     50.84
  WD13:  Seg 43   580-618      4.39  296.14  0.00634       20.0%     23.73
  WD14:  Seg 46   622-660      4.68  307.84  0.00441        7.5%     36.38
  WD15:  Seg 49   663-701      8.13  450.62  5.3e-05       25.0%     54.48

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     ----EEEEDWFSDAREEVSSVSDCN-SEVADDFVQATGDLDLWT
   WD 2   56-91     -------QKFFQSMGFSFKKRDFDL-DLDLLGDSSSDHIPVSKQ
   WD 3   96-134    -SE---TDHEEEEKEEKLLRNESTS-SGSSVSSFSTASLAEAFS
   WD 4  142-176    --------RAKNIDDQILLTRDYSS-NSSSIAEGLSESDSSRFD
   WD 5  198-236    -KG---WLKKLGVLTHVLDKTEECT-DGESTRSSIRRQLTRVQS
   WD 6  247-285    -LC---VGQEFSAHDGSIVVMKFSH-DGKYLASAGEDCVVRVWN
   WD 7  286-328    IIEDERRDNEFEVAESDSSCVYFGM-NDKSQIEPLKTENEKIEK
   WD 8  353-390    -ET---PQHEFRGHTGEILDLSWSE-KG-FLLSSSVDETVRLWR
   WD 9  394-433    -SD---ECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD
   WD10  434-474    VSQ--FRVVDYTDIRQIVTALCYRP-DGKGAVVGSMTGECRFYH
   WD11  489-525    HG-------KKKVPNKRITGFQFFPGDSDKVMVTSADSQIRIIC
   WD12  533-571    -LK---KASSLRTTLMSPTFASFTS-DGKHIVSTIEESGIHVWD
   WD13  580-618    -SS---QKPKTIRSYEGFLSRNVSV-AIPWLGQGKEDSIIADLE
   WD14  622-660    -AH---FPVPLDYFSPMKGATTWPE-EKLGVVAGTAAAAVSATV
   WD15  663-701    -RS---KLRLLKSVCQNVHGSTPHL-WGLVIVTATWDGSIRVFH

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD