Input parameters:

  Query = AT5G40880.1 (Len=472)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G40880.1, Len=472):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGHQSSWMKQTVIDSVVQSSKVGVFSMFSMDYKAPRKYSHGRNFGVARQQDFAADIVTRRPYAPYDNGMKKGPNKLSRNL 80  
WD40-rpts      (_________________WD 1________________)        (_______________WD 2_____________

Query       81 VWTSKEYKSPEGNRPRQNAANGSAKPQVIGTGHRVSNQPRKNAVYGPRSSSLSDTRGCGPRLNGSPKKSVCNFWKDGNCK 160 
WD40-rpts      _)   (________________WD 3_______________)             (________________WD 4____

Query      161 KGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGSLISEGPW 240 
WD40-rpts      ___________)    (_________________WD 5________________)   (_______________WD 6__

Query      241 VFLGLPNAVKAFNVQNSKDVHLEGVVGQVHAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVV 320 
WD40-rpts      ____________)  (________________WD 7_______________)        (________________WD 

Query      321 GGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTRKQELSVHTL 400 
WD40-rpts      8________________)   (________________WD 9_______________)   (__________________

Query      401 CGMHDAEAKPIMFCSYQNGAVGIFDLPSFEERGKMFSTQTICTLTIGPGGLLFSGDKSGNLRVWSLASGTKV 472 
WD40-rpts      _WD10___________________)   (________________WD11_______________)       

11 WD40-repeats found in QUERY=AT5G40880.1 (Len=472):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       4.74  310.30  0.00409       15.0%     25.24
  WD 2:  Seg  4    48-82       3.76  269.97  0.01424       12.5%     21.81
  WD 3:  Seg  6    86-122      6.99  403.31  0.00023        7.5%     33.41
  WD 4:  Seg  8   136-172      4.02  280.67  0.01023       20.0%     37.85
  WD 5:  Seg 12   177-215      9.22  495.31  1.3e-05       27.5%     54.11
  WD 6:  Seg 16   219-253      5.93  359.80  0.00088       17.5%     46.31
  WD 7:  Seg 20   256-292      6.16  369.17  0.00066       22.5%     50.17
  WD 8:  Seg 24   301-338      7.84  438.69  7.6e-05       47.5%     44.90
  WD 9:  Seg 28   342-378      7.70  432.83  9.1e-05       42.5%     50.37
  WD10:  Seg 32   382-425      5.92  359.17  0.00090       15.0%     49.05
  WD11:  Seg 36   429-465      5.83  355.61  0.00100       22.5%     53.41

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MGH--QSSWMKQT--VIDSVVQSSKVGV---FSMFSMDYKAPRKYS
   WD 2   48-82     -----RQQDFAAD--IVTRRPYAPYDNG---MKKGPNKL-SRNLVW
   WD 3   86-122    ---EYKSPEGNRP--RQNAANGSAKPQV---IGTGHRVS-NQPRKN
   WD 4  136-172    -RGCGPRLNGSPK--KS-VCNFWKDGN----CKKGEKCQ-FLHSWS
   WD 5  177-215    -LAMVAALEGHKN--DIKGIALPQGSDK---LFSVSGDG-TLLIWD
   WD 6  219-253    -GQCVRSINLQAE--AGSLISEGP-------WVFLGLPN-AVKAFN
   WD 7  256-292    -NSKDVHLEGVVG--QVHA--MTAANGM---LFAGTSSG-SILVWK
   WD 8  301-338    -FKYLTSLEGHHS--GE-VTCFVVGGEV---LYSGSVDK-TIKVWD
   WD 9  342-378    -LQCRMTLKQHIG--TVTSLLCWD--KC---LISSSLDG-TIKLWA
   WD10  382-425    -NESLKVVQTRKQELSVHTLCGMHDAEAKPIMFCSYQNG-AVGIFD
   WD11  429-465    -FEERGKMFSTQT---ICTLTIGPGG-L---LFSGDKSG-NLRVWS

   WD40 Template    TGECLRTLSGHTS--GVTSVSFSPDGKR---LVSGSEDG-TIKVWD