Input parameters:

  Query = AT5G35930.1 (Len=1040)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G35930.1, Len=1040):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPKVVALYMPPSVEYVISVFSVLRCGEAFLPLDPSWPRERVLSLISSSNISLVIACGLSSVESHWLVERNVCPVLLFSMD 80  
WD40-rpts                                                                                      

Query       81 EKLSVETGCSSFVWPCKKERQRKFCYLMYTSGSTGKPKGVCGTEQGLLNRFLWMQELYPVVGEQRFAFKTSVGFIDHIQE 160 
WD40-rpts                                                                                      

Query      161 FLGAILSSTALVIPPFTLLKENMISIIDFLEEYSISRLLAVPSMIRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLW 240 
WD40-rpts                                                                                      

Query      241 DSLHSLLPETCFLNLYGSTEVSGDCTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLLGDEDKPYEGEICVSGLCLSQG 320 
WD40-rpts                                                                                      

Query      321 YMHSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGKRMALEEIETTLELNPDIA 400 
WD40-rpts                                                                                      

Query      401 EAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGGKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTT 480 
WD40-rpts                                                                                      

Query      481 GAQDMMQSNGTNSLLQNIKKAVCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGK 560 
WD40-rpts                                                                                      

Query      561 LREDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEKFSPKRMKENKLWDSGFSQ 640 
WD40-rpts                                                                                      

Query      641 IQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVSMQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDA 720 
WD40-rpts                                                                            (_________

Query      721 KSGSMYWETILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTLY 800 
WD40-rpts      ______________WD 1______________________)                                       

Query      801 ALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFELEAPIFGSLCITPSTQNVICCL 880 
WD40-rpts                                                                                      

Query      881 VDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQVLVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFE 960 
WD40-rpts                                                                                      

Query      961 SHELLASDRLVTVCSSSGRVHVLRVRPSILSRDSHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSLESCR 1040
WD40-rpts                                                                                      

1 WD40-repeats found in QUERY=AT5G35930.1 (Len=1040):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21   711-761      3.94  277.24  0.01137       15.0%     45.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  711-761    HSRKFSCIDAKSGSMYWETILEGRIEGSAMVVGDFSQVVIGCYKGKLYFLD

   WD40 Template    TGECLRTLSGHTSGVT-----------SVSFSPDGKRLVSGSEDGTIKVWD