Input parameters:

  Query = AT5G35770.1 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G35770.1, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTSSSSSDNGAGGSGGVFEAPSPSRPRRGANDVWPEPFLESLAVQVAVNASTSAGLLAAAPALANVFRVCTTWHAVSRS 80  
WD40-rpts                                                                             (________

Query       81 DHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDEPDSLSCRCLTLSDLYLAAGFADGTV 160 
WD40-rpts      ____________________________________WD 1________________________________________

Query      161 RLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISDSRLTFATMDGDIHVAEIDGVGHTRTAYAGDIVNDGALVDFTGCG 240 
WD40-rpts      ___)                                                                            

Query      241 RWWVGLFAGVPGRAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWRIMVIDLRNQGV 320 
WD40-rpts                                                                                      

Query      321 IIGEDEEQRRGLIVTGFDANDEAYVRLDSRGNASVRRVNTQQTVCEFRVSGAAQRRVMGCVNRLHALMCAGGIMRVWEVE 400 
WD40-rpts                                                       (_______________________WD 2___

Query      401 RGEYLYSIRERVGEVDAIVADDRHVAVASASSTAQSIIHLWDFGAL 446 
WD40-rpts      ____________________)                         

2 WD40-repeats found in QUERY=AT5G35770.1 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    72-164      3.90  275.63  0.01195       25.0%     35.00
  WD 2:  Seg 20   370-421      2.85  232.58  0.04474       15.0%     15.53

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-164    TTWHAVSRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTY------FTLQFDPSDVDEPDSLSCRCLTLSDLYLAAG------FADGTVRLFL
   WD 2  370-421    SGAAQRRVM-----------------GCVN--------------------RLHALMCAGGIMRVW----------------EVERGEYLYSIRERVGEVDAIVAD

   WD40 Template    TGECLRTLS-----------------GHTS--------------------GV------TSVSFSP----------------DGKRLVSG------SEDGTIKVWD