Accession: AT5G28350.2 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT5G28350.2 (Len=1087)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G28350.2, Len=1087):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSVREEGENLQAVWSPDAK 80  
WD40-rpts                                           (_________________WD 1________________)   (

Query       81 LIAVLVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDRLLSYTLGNGLVSGVASPTLA 160 
WD40-rpts      _________________WD 2________________)                                    (_____

Query      161 SDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKKGLKYTESIRAEKKVGGDAVCASVASEQQILAVGTRKGMVE 240 
WD40-rpts      _____________WD 3__________________)        (_________________WD 4______________

Query      241 LYDLSHSISLLRTVSLHDWGYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINPK 320 
WD40-rpts      __)             (________________WD 5________________)                          

Query      321 QDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLH 400 
WD40-rpts                                              (_________________WD 6_________________)

Query      401 LKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDIRFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETY 480 
WD40-rpts       (________________WD 7_______________)                                          

Query      481 ELLFYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHP 560 
WD40-rpts                                                                                      

Query      561 AAMGFVPDQHLREGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVELFWVTCGQSEEKTNLVEEVS 640 
WD40-rpts                                                                                      

Query      641 WLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILH 720 
WD40-rpts                                                                                      

Query      721 CLLRHLLQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPEYY 800 
WD40-rpts                                                                                      

Query      801 DVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQYCALRLLQATLDESLYDLAGEL 880 
WD40-rpts                                                                                      

Query      881 VRFLLRSGRDIEQAPTESDSLSPKLLGFLIFGSSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFV 960 
WD40-rpts                                                                                      

Query      961 KGTQFDIVDFLQRERYGCAQLQNFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFR 1040
WD40-rpts                                                                                      

Query     1041 YDLRLWKAYSVTLESHLAFAHYHDLLQILEAKLSATSREESNRGSIS 1087
WD40-rpts

7 WD40-repeats found in QUERY=AT5G28350.2 (Len=1087):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    38-76       3.53  260.66  0.01896       15.0%     38.32
  WD 2:  Seg  7    80-118      3.96  278.08  0.01108       15.0%     56.17
  WD 3:  Seg 14   155-196      4.51  300.89  0.00547       15.0%     52.69
  WD 4:  Seg 18   205-243      5.32  334.29  0.00194       17.5%     50.08
  WD 5:  Seg 23   257-294      5.93  359.74  0.00088       17.5%     38.30
  WD 6:  Seg 31   361-400      5.60  346.17  0.00134       17.5%     43.69
  WD 7:  Seg 34   402-438      3.85  273.56  0.01274       22.5%     40.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-76     SPSHLEL--WGSSQQRVRLGKYMRDDKSVREEG-ENLQAVWS
   WD 2   80-118    -KLIAVL--VPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSIS
   WD 3  155-196    ASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCS
   WD 4  205-243    -TESIRA--EKKVGGDAVCASVASEQQILAVGTRKGMVELYD
   WD 5  257-294    --HDWGY--SADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWS
   WD 6  361-400    GKCCLNR--GVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLH
   WD 7  402-438    --KLPVS--YISQNWPVQHVAASEDGKYLAFAGLHG-LILYD

   WD40 Template    TGECLRT--LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD