Input parameters:

  Query = AT5G27945.1 (Len=428)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27945.1, Len=428):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIY 80  
WD40-rpts                                                              (_________________WD 1__

Query       81 CRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINW 160 
WD40-rpts      ______________)   (________________WD 2________________)(___________________WD 3

Query      161 TQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVC 240 
WD40-rpts      ___________________)   (________________WD 4________________)    (______________

Query      241 GLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGA 320 
WD40-rpts      ___WD 5________________)         (__________________WD 6__________________)   (_

Query      321 CLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWN 400 
WD40-rpts      ________________WD 7_________________)   (_________________WD 8________________)

Query      401 VFGEPPKTTKKAASKKYTEPFAHVNHIR 428 
WD40-rpts                                  

8 WD40-repeats found in QUERY=AT5G27945.1 (Len=428):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    57-95       5.48  341.09  0.00157       15.0%      6.05
  WD 2:  Seg  7    99-136      5.88  357.70  0.00094       17.5%     49.26
  WD 3:  Seg 11   137-180      9.16  492.93  1.4e-05       32.5%     54.73
  WD 4:  Seg 15   184-221      5.83  355.48  0.00101       35.0%     53.50
  WD 5:  Seg 19   226-264      9.88  522.84  5.6e-06       35.0%     53.90
  WD 6:  Seg 23   274-315      6.98  403.06  0.00023       27.5%     39.14
  WD 7:  Seg 27   319-358      5.45  339.70  0.00164       27.5%     50.60
  WD 8:  Seg 31   362-400      9.68  514.55  7.2e-06       35.0%     54.19

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-95     -AYF----AVPVDH-FLTNPPSLRLSQTIYCRR---G--SSYVETEKVEE
   WD 2   99-136    -DDF----LKQVWF-LTDNL-VFFFVDIEEYIV---I--EQLGDTVYLWD
   WD 3  137-180    ASSCYTSKLVTIDD-ENGPVTSINWTQDGLDLA---V--GLDNSEVQVWD
   WD 4  184-221    -NRH----VRTLRGGHESRVGSLAW--NNHILT---T--GGMDGKIVNND
   WD 5  226-264    -SSI----IGTYVG-HTEEVCGLKWSESGKKLA---S--GGNDNVVHIWD
   WD 6  274-315    -RQW----LHRFEE-HTAAVRALAWCPFQASLLATGG--GVGDGKINFWN
   WD 7  319-358    -GAC----LNSVET-G-SQVCSLLWSKSERELL---SAHGFTQNQLTLWK
   WD 8  362-400    -MVK----MAELNG-HTSRVLFMAQSPDGCTVA---S--AAGDETLRLWN

   WD40 Template    TGEC----LRTLSG-HTSGVTSVSFSPDGKRLV---S--GSEDGTIKVWD