Input parameters:

  Query = AT5G27640.2 (Len=738)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27640.2, Len=738):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVVDIDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQDDQSEFDTGFGNIIVVDHLPVVPKEKFEKLEGVVKK 80  
WD40-rpts                                                                                      

Query       81 IYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQKGAQTRLFLMVEYFLRVSLNVWGSLQEAQNAKEKSHGYKLDKSH 160 
WD40-rpts                                                                                      

Query      161 IFAVNMFDDFDRLMNVKEEWEPPQARPYVPGENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTESY 240 
WD40-rpts                                                                 (___________________W

Query      241 VQWSPLGTYLVTLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMM 320 
WD40-rpts      D 1___________________)(______________________WD 2______________________)       

Query      321 RDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSL 400 
WD40-rpts                                                          (____________________WD 3___

Query      401 FVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVL 480 
WD40-rpts      _________________)   (_________________WD 4________________)           (________

Query      481 ELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNG 560 
WD40-rpts      ____________WD 5____________________)       (__________________WD 6_____________

Query      561 QLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSFLTA 640 
WD40-rpts      _____)(____________________WD 7___________________)                             

Query      641 EKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQWKSLHEEEKLVRQNLRDGEVSDVEEDEYEAK 720 
WD40-rpts                                                                                      

Query      721 EVEFEDLIDVTEEIVQES 738 
WD40-rpts                        

7 WD40-repeats found in QUERY=AT5G27640.2 (Len=738):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   220-263      3.10  242.64  0.03294       17.5%     33.82
  WD 2:  Seg 11   264-313      5.25  331.54  0.00212       35.0%     46.16
  WD 3:  Seg 19   373-418      3.84  273.17  0.01290       15.0%     42.34
  WD 4:  Seg 23   422-460      3.41  255.49  0.02222       12.5%     44.23
  WD 5:  Seg 28   472-517      3.73  268.67  0.01482       12.5%     55.86
  WD 6:  Seg 32   525-566      3.98  279.17  0.01072       15.0%     45.66
  WD 7:  Seg 36   567-611      4.74  310.59  0.00405       12.5%     51.71

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  220-263    NDTR---QKAPEPVHKRPYWTESYVQWSPLGTYLV-------T----------LHK-----QG---AAVWGG
   WD 2  264-313    ADTF---TRLM----RYQHSMVKLVDFSPGEKYLV-------TYHSQEPSNPRDAS-----KV---EIKVFD
   WD 3  373-418    -FSL---IDKK----SMKVDNVVDICWSPTDSILSLFVPEQGG----------GNQ-----PA---KVALVQ
   WD 4  422-460    -KVE---LRQK----NLFSVSDCKMYWQSSGEYLA-------V----------KVD-----RY---TKTKKS
   WD 5  472-517    ERDIPIEVLEL----DNKNDKIIAFAWEPKGHRFA-------V----------IHG-----DQPRPDVSFYS
   WD 6  525-566    -GRV---SKLA----TLKAKQANALFWSPTGKYII----LAGL----------KGF-----NG---QLEFFN
   WD 7  567-611    VDEL---ETMA----TAEHFMATDIEWDPTGRYVA-------T----------AVTSVHEMEN---GFTIWS

   WD40 Template    TGEC---LRTL----SGHTSGVTSVSFSPDGKRLV-------S----------GSE-----DG---TIKVWD