Input parameters:

  Query = AT5G27640.1 (Len=712)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27640.1, Len=712):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVVDIDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQDDQSEFDTGFGNIIVVDHLPVVPKEKFEKLEGVVKK 80  
WD40-rpts                                                                                      

Query       81 IYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQAR 160 
WD40-rpts                                                                                      

Query      161 PYVPGENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLVTLHKQGAAVWGGADT 240 
WD40-rpts                                            (________________WD 1________________)(___

Query      241 FTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVF 320 
WD40-rpts      ____________________WD 2______________________)                                 

Query      321 RWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELR 400 
WD40-rpts                                (____________________WD 3____________________)   (____

Query      401 QKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 480 
WD40-rpts      _____________WD 4________________)           (____________________WD 5__________

Query      481 DQPRPDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEW 560 
WD40-rpts      __________)       (__________________WD 6__________________)(___________________

Query      561 DPTGRYVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSL 640 
WD40-rpts      _WD 7___________________)                                                       

Query      641 LLSEQDREKRKALKEEWEKWVMQWKSLHEEEKLVRQNLRDGEVSDVEEDEYEAKEVEFEDLIDVTEEIVQES 712 
WD40-rpts                                                                              

7 WD40-repeats found in QUERY=AT5G27640.1 (Len=712):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   199-236      3.07  241.32  0.03430       22.5%     43.92
  WD 2:  Seg 12   237-287      3.94  277.38  0.01133       35.0%     46.77
  WD 3:  Seg 20   347-392      3.94  277.43  0.01131       15.0%     42.22
  WD 4:  Seg 24   396-434      3.27  249.58  0.02664       12.5%     37.78
  WD 5:  Seg 28   446-491      3.48  258.53  0.02024       12.5%     54.95
  WD 6:  Seg 32   499-540      4.53  301.74  0.00533       15.0%     46.58
  WD 7:  Seg 36   541-585      4.76  311.13  0.00399       12.5%     50.78

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-236    -KA-P---EPVHKRPYWTESYVQWSPLGTYLV-------T----------LHK-----QG----AAVWG
   WD 2  237-287    GADTF---TRLMRYQHSMVKLVDFSPGEKYLV-------TYHSQEPSNPRDAS-----KV---EIKVFD
   WD 3  347-392    -FS-L---IDKKSMKVDNVVDICWSPTDSILSLFVPEQGG----------GNQ-----PA---KVALVQ
   WD 4  396-434    -KV-E---LRQKNLFSVSDCKMYWQSSGEYLA-------V----------KVD-----RY---TKTKKS
   WD 5  446-491    ERD-IPIEVLELDNKNDKIIAFAWEPKGHRFA-------V----------IHG-----DQPRPDVSFYS
   WD 6  499-540    -GR-V---SKLATLKAKQANALFWSPTGKYII----LAGL----------KGF-----NG---QLEFFN
   WD 7  541-585    VDE-L---ETMATAEHFMATDIEWDPTGRYVA-------T----------AVTSVHEMEN---GFTIWS

   WD40 Template    TGE-C---LRTLSGHTSGVTSVSFSPDGKRLV-------S----------GSE-----DG---TIKVWD