Input parameters:

  Query = AT5G27570.1 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27570.1, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFDFANYALTQGRKRNVDEVTSASRKAYMTQLAEAMNQNRTRILAFRNKPKALLSSNHSDPPHQQPISVKPRRYIPQNS 80  
WD40-rpts            (_________________WD 1_________________)  (_________________WD 2__________

Query       81 ERVLDAPGIADDFYLNLLDWGSSNVLAIALGDTVYLWDASSGSTYKLVTIDEEEGPVTSINWTQDGLDLAIGLDNSEVQL 160 
WD40-rpts      _______)                              (___________________WD 3__________________

Query      161 WDCVSNRQVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDN 240 
WD40-rpts      _)   (________________WD 4________________)    (_________________WD 5___________

Query      241 VVHIWDHRSVASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLLWS 320 
WD40-rpts      _____)          (__________________WD 6__________________)   (_________________W

Query      321 KSERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKY 400 
WD40-rpts      D 7_________________)   (_________________WD 8________________)                 

Query      401 TDPFAHVNHIR 411 
WD40-rpts                 

8 WD40-repeats found in QUERY=AT5G27570.1 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       6.88  398.80  0.00026       12.5%     34.74
  WD 2:  Seg  4    49-88       7.80  436.76  8.1e-05       10.0%     24.76
  WD 3:  Seg 11   119-162      8.45  463.58  3.5e-05       27.5%     57.02
  WD 4:  Seg 15   166-203      5.42  338.73  0.00169       35.0%     55.00
  WD 5:  Seg 19   208-246      9.71  515.70  7.0e-06       35.0%     48.45
  WD 6:  Seg 23   257-298      6.90  399.78  0.00025       30.0%     40.59
  WD 7:  Seg 27   302-341      5.71  350.43  0.00118       17.5%     46.33
  WD 8:  Seg 31   345-383      9.54  508.90  8.6e-06       35.0%     54.61

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     NYA----LTQGRKR-NVDEVTSASRKAYMTQLA---E-AMNQNRTRILA
   WD 2   49-88     NKP----KALLSSN-HSDPPHQQPISVKPRRYI---P-QNSERVLDAPG
   WD 3  119-162    ASSGSTYKLVTIDE-EEGPVTSINWTQDGLDLA---I-GLDNSEVQLWD
   WD 4  166-203    -NR----QVRTLRGGHESRVGSLAW--NNHILT---T-GGMDGKIVNND
   WD 5  208-246    -SS----IVETYLG-HTEEVCGLKWSESGKKLA---S-GGNDNVVHIWD
   WD 6  257-298    -RQ----WLHRFEE-HTAAVRALAWCPFQASLLATGG-GVGDGKIKFWN
   WD 7  302-341    -GA----CLNSVET-GSQVCSLLWSKSERELLS---SHGFTQNQLTLWK
   WD 8  345-383    -MV----KMAELNG-HTSRVLFMAQSPDGCTVA---S-AAGDETLRLWN

   WD40 Template    TGE----CLRTLSG-HTSGVTSVSFSPDGKRLV---S-GSEDGTIKVWD