Input parameters:

  Query = AT5G27080.1 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27080.1, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSDTCTVPDHFLPRKLSKQNLDRFIPNRSAMDFDFANYALTQGRKRNVDEITSASRKAYMTQLAVVMNQNRTRILAFRN 80  
WD40-rpts                                                                                      

Query       81 KPKALLSSNHSDSPHQNPKSVKPRRYIPQNSERVLDAPGLMDDFYLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVT 160 
WD40-rpts                                                                           (__________

Query      161 IDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDFVSNRQVRTLIGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSS 240 
WD40-rpts      _________WD 1___________________)    (________________WD 2_______________)    (_

Query      241 IVGTYLGHTEEVCGLKWSESGKKLASGGNYNVVHIWDHRSVASSKPTRQWLHRFEEHTAAVRALAWCPFQATLLATGGGV 320 
WD40-rpts      ________________WD 3________________)          (__________________WD 4__________

Query      321 GDGKIKFWNTHTGACLNSVETGSQVCSLLWSQRERELLSSHGFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCT 400 
WD40-rpts      ________)   (_________________WD 5_________________)   (_________________WD 6___

Query      401 VASAAGDENLRLWNVFGEPPKTTKKAASKNYLELFSHVNSLRWCLVSFASGIDVLGKSNIIHSNCD 466 
WD40-rpts      _____________)  (___________________WD 7__________________)       

7 WD40-repeats found in QUERY=AT5G27080.1 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   150-193      8.23  454.63  4.6e-05       27.5%     57.99
  WD 2:  Seg 10   198-234      5.64  347.59  0.00129       27.5%     51.30
  WD 3:  Seg 14   239-277      9.38  502.26  1.1e-05       32.5%     52.91
  WD 4:  Seg 18   288-329      6.65  389.16  0.00035       30.0%     41.67
  WD 5:  Seg 22   333-372      5.60  346.12  0.00135       17.5%     48.01
  WD 6:  Seg 26   376-414      9.12  491.50  1.5e-05       30.0%     53.86
  WD 7:  Seg 29   417-459      4.05  281.75  0.00989       17.5%     25.63

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  150-193    ASSGSTSELVTIDEDKGPVTSINWTQDGLD----LA---V-GLDNSEVQLWD
   WD 2  198-234    -R----QVRTLIGGHESRVGSLAW--NNHI----LT---T-GGMDGKIVNND
   WD 3  239-277    -S----SIVGTYLGHTEEVCGLKWSESGKK----LA---S-GGNYNVVHIWD
   WD 4  288-329    -R----QWLHRFEEHTAAVRALAWCPFQAT----LLATGG-GVGDGKIKFWN
   WD 5  333-372    -G----ACLNSVETGSQVCSLLWSQREREL----LS---SHGFTQNQLTLWK
   WD 6  376-414    -M----SKMAELNGHTSRVLFMAQSPNGCT----VA---S-AAGDENLRLWN
   WD 7  417-459    -G----EPPKTTKKAASKNYLELFSHVNSLRWCLVS---F-ASGIDVLGKSN

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKR----LV---S-GSEDGTIKVWD