Input parameters:

  Query = AT5G26900.1 (Len=444)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G26900.1, Len=444):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSGMRATCTVPEHFLPRKLSKQNLDRFIPNRSAKDFDFANYALTQGSKRNLDEVTSASRKAYMTQLAVVMNQNRTRILA 80  
WD40-rpts                                                                            (_________

Query       81 FRNKPKSLLSTNHSDSPHQNPKPVKPRRYIPQNSERVLDAPGLRDDFSLNLLDWGSANVLAIALGDTVYLWDASSGSTSE 160 
WD40-rpts      ________WD 1_________________)   (_________________WD 2________________)(_______

Query      161 LVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWDNHILTTGGMDGKIVNNDVRI 240 
WD40-rpts      ____________WD 3___________________)   (________________WD 4________________)   

Query      241 RSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHRFEEHTAAVRALAWCPFQASLLATGG 320 
WD40-rpts       (_________________WD 5________________)         (__________________WD 6________

Query      321 GVGDGKIKFWNTHTGACLNSVETGSQVCSLLWSQSERELLSSHGFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNG 400 
WD40-rpts      __________)   (_________________WD 7_________________)   (_________________WD 8_

Query      401 CTVASAAGDENLRLWNVFGEPPKTTKKAASKKYPELFSHVNSLR 444 
WD40-rpts      _______________)                            

8 WD40-repeats found in QUERY=AT5G26900.1 (Len=444):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    71-110      5.44  339.32  0.00166        2.5%      6.84
  WD 2:  Seg  4   114-152      4.74  310.50  0.00407       12.5%     45.09
  WD 3:  Seg  8   153-196      8.20  453.54  4.8e-05       27.5%     57.58
  WD 4:  Seg 12   200-237      5.52  342.77  0.00149       37.5%     53.37
  WD 5:  Seg 16   242-280      9.37  501.91  1.1e-05       30.0%     51.62
  WD 6:  Seg 20   290-331      6.61  387.83  0.00037       30.0%     35.04
  WD 7:  Seg 23   335-374      5.53  342.95  0.00149       17.5%     47.14
  WD 8:  Seg 27   378-416      9.14  492.14  1.4e-05       30.0%     54.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    MN----QNRTRIL-AFRNKPKSLLSTNHSDSPH---Q-NPKPVKPRRYI
   WD 2  114-152    -S----ERVLDAP-GLRDDFSLNLLDWGSANVL---A-IALGDTVYLWD
   WD 3  153-196    ASSGSTSELVTID-EDKGPVTSINWTQDGLDLA---V-GLDNSEVQLWD
   WD 4  200-237    -N----RQVRTLRGGHESRVGSLAW--DNHILT---T-GGMDGKIVNND
   WD 5  242-280    -S----SIVETYL-GHTEEVCGLKWSESGNKQA---S-GGNDNVVHIWD
   WD 6  290-331    -R----QWLHRFE-EHTAAVRALAWCPFQASLLATGG-GVGDGKIKFWN
   WD 7  335-374    -G----ACLNSVE-TGSQVCSLLWSQSERELLS---SHGFTQNQLTLWK
   WD 8  378-416    -M----SKMAELN-GHTSRVLFMAQSPNGCTVA---S-AAGDENLRLWN

   WD40 Template    TG----ECLRTLS-GHTSGVTSVSFSPDGKRLV---S-GSEDGTIKVWD