Input parameters:

  Query = AT5G25780.1 (Len=714)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G25780.1, Len=714):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVVDIDVLTAQLGINWSDVNLDSIQLPPGNDFGIESDDESVYQDDQSEFDTGFGNIIVVDHLPVVPKEKFEKLEGVVK 80  
WD40-rpts                                                                                      

Query       81 KIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQE 160 
WD40-rpts                                                                                      

Query      161 RPYVPGENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKRSYWTESYVQWSPIGTYLVTLHKQGAAVWGGAD 240 
WD40-rpts                                             (________________WD 1________________)(__

Query      241 TFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPV 320 
WD40-rpts      _____________________WD 2______________________)                                

Query      321 FRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVEL 400 
WD40-rpts                                 (____________________WD 3____________________)   (___

Query      401 RQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 480 
WD40-rpts      ______________WD 4________________)           (____________________WD 5_________

Query      481 GDQPRPDVSFYSMKTAQNTGRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIE 560 
WD40-rpts      ___________)       (__________________WD 6__________________)(__________________

Query      561 WDPTGRYVATSVTTVHEMENGFTIWSFNGNMVYRILKDHFFQLAWRPRPASFLTAEKEEEIAKNLRNYSKRYEAEDQDVS 640 
WD40-rpts      __WD 7___________________)                                                      

Query      641 LLLSEQDREKRRALNEEWQKWVMQWKSLHEEEKLVRQNLRDGEVSDVEEDEYEAKEVEFEDLIDVTEEIVQELM 714 
WD40-rpts                                                                                

7 WD40-repeats found in QUERY=AT5G25780.1 (Len=714):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   200-237      3.19  246.47  0.02930       22.5%     44.92
  WD 2:  Seg 10   238-288      3.86  274.29  0.01246       35.0%     42.94
  WD 3:  Seg 18   348-393      3.59  262.79  0.01776       15.0%     41.76
  WD 4:  Seg 22   397-435      3.04  240.32  0.03536       12.5%     39.39
  WD 5:  Seg 26   447-492      3.37  253.78  0.02342       12.5%     55.64
  WD 6:  Seg 30   500-541      3.97  278.69  0.01088       15.0%     46.69
  WD 7:  Seg 34   542-586      4.53  301.59  0.00536       12.5%     52.44

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  200-237    -KKP---EPVHKRSY-WTESYVQWSPIGTYLV-------T----------LHK-----QG----AAVWG
   WD 2  238-288    GADT---FTRLMRYQHSMVKLVDFSPGEKYLV-------TYHSQEPSNPRDAS-----KV---EIKVFD
   WD 3  348-393    -FSL---IDKKSMKV-DNVVDICWSPTDSILSLFVPEQGG----------GNQ-----PA---KVALVQ
   WD 4  397-435    -KVE---LRQKNLFS-VSDCKMYWQSSGEYLA-------V----------KVD-----RY---TKTKKS
   WD 5  447-492    ERDIPIEVLELDNKN-DKIIAFAWEPKGHRFA-------V----------IHG-----DQPRPDVSFYS
   WD 6  500-541    -GRV---SKLATLKA-KQANALFWSPTGKYII----LAGL----------KGF-----NG---QLEFFN
   WD 7  542-586    VDEL---ETMATAEH-FMATDIEWDPTGRYVA-------T----------SVTTVHEMEN---GFTIWS

   WD40 Template    TGEC---LRTLSGHT-SGVTSVSFSPDGKRLV-------S----------GSE-----DG---TIKVWD