Input parameters:

  Query = AT5G25230.1 (Len=973)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G25230.1, Len=973):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGSLYGECGNYIGPEIESDRDSDDSVEDEDLQEPGGSNGWITTINENQNIVLPEDKKYYPIAKEVYGEDVETLVMDEDE 80  
WD40-rpts                                                                                      

Query       81 QSLEQPIIKPVRDIRFEVGVIKDQTTTYVSTLFLIGLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDK 160 
WD40-rpts                                                                                      

Query      161 HMRYTDTRVDEQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAI 240 
WD40-rpts                                  (_______________________________WD 1________________

Query      241 RHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRYTIEVINNHISAASTNAADLPLIDPAAGNVCFASGTAGWSFTLQ 320 
WD40-rpts      ______________)                                                                 

Query      321 SFARMYAKLHGVAMDVDKFASRLWGDVYYHPDTRVFNTSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELG 400 
WD40-rpts                                                                                      

Query      401 VTLSNSAYKLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPREAAARKVDHSYTGTKDSPIYESMVECDPSGPLMVNVTK 480 
WD40-rpts                                                                                      

Query      481 LYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIM 560 
WD40-rpts                                                                                      

Query      561 KTATLCNASYDEDVYIFRALKFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSI 640 
WD40-rpts                                                                                      

Query      641 IKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNKKNKLTMIAEPLDRGLAEDIENGVVSIDWNRVQLGDFFRT 720 
WD40-rpts                                                                                      

Query      721 KYDWDLLAARSIWAFGPDKQGTNILLDDTLPTEVDRNLMMGVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 800 
WD40-rpts                                                                                      

Query      801 LHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSDVPQPGTPAYIVKAFLPVIES 880 
WD40-rpts                                                                                      

Query      881 FGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSGNKFFDEAMMVE 960 
WD40-rpts                                                                                      

Query      961 LAQQTGDLHLQMI 973 
WD40-rpts                   

1 WD40-repeats found in QUERY=AT5G25230.1 (Len=973):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   189-255      3.20  246.67  0.02913       20.0%     20.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  189-255    DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHLPIVVVIN

   WD40 Template    TGECLRTLSGHTSGVTSVSFS---------PDGKRLVSGSEDGT------------------IKVWD